Locus 4907

Sequence ID 3L_DroMel_CAF1
Location 13,657,047 – 13,657,147
Length 100
Max. P 0.874038
window7745

overview

Window 5

Location 13,657,047 – 13,657,147
Length 100
Sequences 5
Columns 100
Reading direction reverse
Mean pairwise identity 93.80
Mean single sequence MFE -21.08
Consensus MFE -18.94
Energy contribution -20.02
Covariance contribution 1.08
Combinations/Pair 1.08
Mean z-score -1.38
Structure conservation index 0.90
SVM decision value 0.88
SVM RNA-class probability 0.874038
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 13657047 100 - 23771897
CAGUUCGGUUAAAUAAAGCUCUGAGUGGCUAGUUUUUCAUGGGAUUUAGUGUUUUUACUUUUUGGAACACUAUUUACUGGUUACUCUCAUUAGCAUACUU
.................(((..(((((((((((...((....))..(((((((((........)))))))))...))))))))))).....)))...... ( -23.60)
>DroSec_CAF1 64526 100 - 1
CAGUUCUGUAAAAUAAAGCUCUGAGUGGCUAGUUUUUCAUGGGAUUUAGUGUUUUUACUUUUUGGAACACUAUUUACUGGUUACUCUCAUUAGCAUACUU
.................(((..(((((((((((...((....))..(((((((((........)))))))))...))))))))))).....)))...... ( -23.60)
>DroSim_CAF1 74788 100 - 1
CAGUUCUGUAAAAUAAAGCUCUGAGUGGCUAGUUUUUCAUGGGAUUUAGUGUUUUUACUUUUUGGAACACUAUUUACUGGUUACUCUCAUUAGCAUACUU
.................(((..(((((((((((...((....))..(((((((((........)))))))))...))))))))))).....)))...... ( -23.60)
>DroEre_CAF1 69583 100 - 1
CAGUUCUGUAAUACAAAGCUCUCAGUGGCAAGUUUUUCAUGGGAAUUAGUGUUUUUACUUUUUGGAACACUAUUUACUGGUUACACUCAUUAGCAUACUU
......((((((.......(((((.(((........))))))))..(((((((((........))))))))).......))))))............... ( -16.10)
>DroYak_CAF1 72617 100 - 1
CAUUUCGGUAAAAUAAAGCACUCAGUGGCAAGUUUUUCGUGGGAUUUAGUGUUUGUACUUUUUGGAACACUAUUUACUGGCUAUUCUCAUUAGCAUACUU
.....(((((((........((((.(((........)))))))...((((((((..........)))))))))))))))((((.......))))...... ( -18.50)
>consensus
CAGUUCUGUAAAAUAAAGCUCUGAGUGGCUAGUUUUUCAUGGGAUUUAGUGUUUUUACUUUUUGGAACACUAUUUACUGGUUACUCUCAUUAGCAUACUU
.................(((..(((((((((((...((....))..(((((((((........)))))))))...))))))))))).....)))...... (-18.94 = -20.02 +   1.08)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:36:39 2006