Locus 4905

Sequence ID 3L_DroMel_CAF1
Location 13,653,112 – 13,653,215
Length 103
Max. P 0.518224
window7742

overview

Window 2

Location 13,653,112 – 13,653,215
Length 103
Sequences 6
Columns 109
Reading direction reverse
Mean pairwise identity 78.02
Mean single sequence MFE -33.30
Consensus MFE -21.02
Energy contribution -23.57
Covariance contribution 2.54
Combinations/Pair 1.11
Mean z-score -1.28
Structure conservation index 0.63
SVM decision value -0.03
SVM RNA-class probability 0.518224
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 13653112 103 - 23771897
AGGAAUGUGAGCCAGGAUGAGCCCAAAACUGGGGCUGAUAUCUUGAGGCCUGCUCGGGCGCAUAAUGAACUUUGGAUGCCUGG----UGGGGCCGUAACCUAAGGGG--
(((.........((((((((((((.......)))))..))))))).(((((..(((((((..(((......)))..)))))))----..)))))....)))......-- ( -38.10)
>DroPse_CAF1 45634 91 - 1
AGGAAUAGGAAU----AUAGGCCAGAUAUAAAAGCAGAU--C-CAGGGACUACGCGGGGGCAUUAUGAACUCCUUAUAUAUAUAAGCAGGAGC---------AGGAC--
.((..((.....----.))..))..((((((..((((.(--(-....))))..))((((..........))))))))))......((....))---------.....-- ( -12.50)
>DroSec_CAF1 60459 103 - 1
AGGAAUGUGAGCCAGGAUGAGCCCAAAACUGGGGCUGAUAUCUUGAGGCCUGCUCGGGCGCAUAAUGAACUUUGGAUGCCUGG----UGGGGCCGUAACUUAAGGGG--
.......((((.((((((((((((.......)))))..))))))).(((((..(((((((..(((......)))..)))))))----..)))))....)))).....-- ( -36.70)
>DroSim_CAF1 70684 103 - 1
AGGAAUGUGAGCCAGGAUGAGCCCAAAACUGGGGCUGAUAUCUUGAGGCCUGCUCGGGCGCAUAAUGAACUUUGGAUGCCUGG----UGGGGCCGUAACUUAAGGGG--
.......((((.((((((((((((.......)))))..))))))).(((((..(((((((..(((......)))..)))))))----..)))))....)))).....-- ( -36.70)
>DroEre_CAF1 63204 105 - 1
AGGAAUGUGAGCCAGGAUGAGCCCAAAACUGGGGCUGAUAUCUUGAGGCCUGCUCGGGCGCAUAAUGAACUUUGGAUGCCUGG----UGGGGCCAAGAGCAAAAGAGGG
..........((((((((((((((.......)))))..))))))).(((((..(((((((..(((......)))..)))))))----..)))))....))......... ( -37.20)
>DroYak_CAF1 68320 105 - 1
AGGAAUGUGAGCCAGGAUGAGCCCAAAACUGGGGCUGAUAUCUUGAGGCCUGCUCGGGCGCAUAAUGAACUUUGGAUGCCUGU----UGGGGCCGCCAGCAAAUGGGAG
.....(((..((((((((((((((.......)))))..))))))).(((((...((((((..(((......)))..)))))).----..)))))))..)))........ ( -38.60)
>consensus
AGGAAUGUGAGCCAGGAUGAGCCCAAAACUGGGGCUGAUAUCUUGAGGCCUGCUCGGGCGCAUAAUGAACUUUGGAUGCCUGG____UGGGGCCGUAACCUAAGGGG__
............((((((((((((.......)))))..))))))).(((((..(((((((..(((......)))..)))))))......)))))............... (-21.02 = -23.57 +   2.54)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:36:36 2006