Locus 4901

Sequence ID 3L_DroMel_CAF1
Location 13,646,727 – 13,646,821
Length 94
Max. P 0.979397
window7735

overview

Window 5

Location 13,646,727 – 13,646,821
Length 94
Sequences 3
Columns 99
Reading direction reverse
Mean pairwise identity 78.50
Mean single sequence MFE -21.97
Consensus MFE -13.24
Energy contribution -12.70
Covariance contribution -0.54
Combinations/Pair 1.29
Mean z-score -2.66
Structure conservation index 0.60
SVM decision value 1.84
SVM RNA-class probability 0.979397
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 13646727 94 - 23771897
UAAGGUACAGACUUUAUUCUCAGAAAAAG----AUAUGAAAGUAUUUUUCUUUGAAGGUGCAUGUCUUGGAACUGAUUU-UGUUUCAAUUUCUAGGAAU
........((((..(((..(((((.((((----((((....)))))))).)))))..)))...))))((((((......-.))))))............ ( -20.90)
>DroEre_CAF1 56759 99 - 1
UAAGGUACAGAUUUUUUUCUCAGAAGUAUUUUAUUUUAAAAGUAUUUUUCUUGGGAGAUGAAUAUCUGGGAAUUGAUUUAUAUUUCAAUUUCUGGGAAU
..........((((.(((((((((((((((((......))))))))))...))))))).)))).((..((((((((........))))))))..))... ( -24.40)
>DroYak_CAF1 61786 95 - 1
UAAGGAACAGACCUUUUUCUCAGUAAAAG----UUCUCAAAGUAUUUUUCUUGAAAGAUGCAAUUCUAAGAAUUGAUUUAUACUUCAAUUUCUUGGAAU
........(((.(((((.......)))))----.)))....((((((((....)))))))).((((((((((((((........)))).)))))))))) ( -20.60)
>consensus
UAAGGUACAGACUUUUUUCUCAGAAAAAG____UUAUAAAAGUAUUUUUCUUGGAAGAUGCAUAUCUAGGAAUUGAUUUAUAUUUCAAUUUCUAGGAAU
.((((......))))..........................((((((((....))))))))...((((((((((((........)))).)))))))).. (-13.24 = -12.70 +  -0.54)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:36:29 2006