Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 175,980 – 176,100 |
Length | 120 |
Max. P | 0.972743 |
Location | 175,980 – 176,100 |
---|---|
Length | 120 |
Sequences | 3 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 96.11 |
Mean single sequence MFE | -43.83 |
Consensus MFE | -41.44 |
Energy contribution | -41.33 |
Covariance contribution | -0.11 |
Combinations/Pair | 1.06 |
Mean z-score | -2.75 |
Structure conservation index | 0.95 |
SVM decision value | 1.70 |
SVM RNA-class probability | 0.972743 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 175980 120 + 23771897 AUUGUGAAAAGGAAAAACCGAUGGGAUGGCUGGAGUUGGAGGUAAUAGAUCGACCGCCUCCUUGCUACUGCAGUCAUCCUGCGCCUUGCGCUUUGUUUUGCGCAGUUUCUCUAAGAGAUU ((((((((((.(((........((((((((((.(((.((((((............)))))).....))).))))))))))((((...))))))).)))).)))))).((((...)))).. ( -42.30) >DroSec_CAF1 9695 120 + 1 AUUGUGAAAAGGAAAAACCGAUGGGAUGGCUGGAGUUGGAGGUAAUAGAUCGACCGCCUCCUUGCUAUUGCAGUCAUCCUGUGCCUUGCGCUUCGUCUUGCGCAGUUUCUCUAAGAGAUU ..........(((.((((..((((((((((((.(((.((((((............)))))).....))).))))))))))))....(((((........))))))))).)))........ ( -39.70) >DroYak_CAF1 9907 120 + 1 AUUGUGAAAAGGAAAAACCGAUGGGAUGGCUGGAGUUGGAGGUAAUAGAUCGACUGCCUCCUUGCUACUGCAGUCAUCCUGUGCCUUGCGCUUCGUCUUGCGCAGUUUUUCCAAGAGAUU ..........((((((((..((((((((((((.(((.(((((((..........))))))).....))).))))))))))))....(((((........)))))))))))))........ ( -49.50) >consensus AUUGUGAAAAGGAAAAACCGAUGGGAUGGCUGGAGUUGGAGGUAAUAGAUCGACCGCCUCCUUGCUACUGCAGUCAUCCUGUGCCUUGCGCUUCGUCUUGCGCAGUUUCUCUAAGAGAUU ..........(((.((((..((((((((((((.(((.((((((............)))))).....))).))))))))))))....(((((........))))))))).)))........ (-41.44 = -41.33 + -0.11)
Location | 175,980 – 176,100 |
---|---|
Length | 120 |
Sequences | 3 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 96.11 |
Mean single sequence MFE | -35.20 |
Consensus MFE | -32.52 |
Energy contribution | -32.30 |
Covariance contribution | -0.22 |
Combinations/Pair | 1.04 |
Mean z-score | -2.25 |
Structure conservation index | 0.92 |
SVM decision value | 0.92 |
SVM RNA-class probability | 0.882739 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 175980 120 - 23771897 AAUCUCUUAGAGAAACUGCGCAAAACAAAGCGCAAGGCGCAGGAUGACUGCAGUAGCAAGGAGGCGGUCGAUCUAUUACCUCCAACUCCAGCCAUCCCAUCGGUUUUUCCUUUUCACAAU .........((((((((((((........))))..(((((((.....))))........(((((..((......))..))))).......)))........))))))))........... ( -36.30) >DroSec_CAF1 9695 120 - 1 AAUCUCUUAGAGAAACUGCGCAAGACGAAGCGCAAGGCACAGGAUGACUGCAAUAGCAAGGAGGCGGUCGAUCUAUUACCUCCAACUCCAGCCAUCCCAUCGGUUUUUCCUUUUCACAAU .........((((((((((((........))))..(((...(((....(((....))).(((((..((......))..)))))...))).)))........))))))))........... ( -33.00) >DroYak_CAF1 9907 120 - 1 AAUCUCUUGGAAAAACUGCGCAAGACGAAGCGCAAGGCACAGGAUGACUGCAGUAGCAAGGAGGCAGUCGAUCUAUUACCUCCAACUCCAGCCAUCCCAUCGGUUUUUCCUUUUCACAAU ........(((((((((((((........))))........(((((.(((.(((.....(((((.(((......))).))))).))).))).)))))....))))))))).......... ( -36.30) >consensus AAUCUCUUAGAGAAACUGCGCAAGACGAAGCGCAAGGCACAGGAUGACUGCAGUAGCAAGGAGGCGGUCGAUCUAUUACCUCCAACUCCAGCCAUCCCAUCGGUUUUUCCUUUUCACAAU .........((((((((((((........))))..(((...(((....(((....))).(((((..((......))..)))))...))).)))........))))))))........... (-32.52 = -32.30 + -0.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:30:57 2006