Locus 49

Sequence ID 3L_DroMel_CAF1
Location 175,980 – 176,100
Length 120
Max. P 0.972743
window66 window67

overview

Window 6

Location 175,980 – 176,100
Length 120
Sequences 3
Columns 120
Reading direction forward
Mean pairwise identity 96.11
Mean single sequence MFE -43.83
Consensus MFE -41.44
Energy contribution -41.33
Covariance contribution -0.11
Combinations/Pair 1.06
Mean z-score -2.75
Structure conservation index 0.95
SVM decision value 1.70
SVM RNA-class probability 0.972743
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 175980 120 + 23771897
AUUGUGAAAAGGAAAAACCGAUGGGAUGGCUGGAGUUGGAGGUAAUAGAUCGACCGCCUCCUUGCUACUGCAGUCAUCCUGCGCCUUGCGCUUUGUUUUGCGCAGUUUCUCUAAGAGAUU
((((((((((.(((........((((((((((.(((.((((((............)))))).....))).))))))))))((((...))))))).)))).)))))).((((...)))).. ( -42.30)
>DroSec_CAF1 9695 120 + 1
AUUGUGAAAAGGAAAAACCGAUGGGAUGGCUGGAGUUGGAGGUAAUAGAUCGACCGCCUCCUUGCUAUUGCAGUCAUCCUGUGCCUUGCGCUUCGUCUUGCGCAGUUUCUCUAAGAGAUU
..........(((.((((..((((((((((((.(((.((((((............)))))).....))).))))))))))))....(((((........))))))))).)))........ ( -39.70)
>DroYak_CAF1 9907 120 + 1
AUUGUGAAAAGGAAAAACCGAUGGGAUGGCUGGAGUUGGAGGUAAUAGAUCGACUGCCUCCUUGCUACUGCAGUCAUCCUGUGCCUUGCGCUUCGUCUUGCGCAGUUUUUCCAAGAGAUU
..........((((((((..((((((((((((.(((.(((((((..........))))))).....))).))))))))))))....(((((........)))))))))))))........ ( -49.50)
>consensus
AUUGUGAAAAGGAAAAACCGAUGGGAUGGCUGGAGUUGGAGGUAAUAGAUCGACCGCCUCCUUGCUACUGCAGUCAUCCUGUGCCUUGCGCUUCGUCUUGCGCAGUUUCUCUAAGAGAUU
..........(((.((((..((((((((((((.(((.((((((............)))))).....))).))))))))))))....(((((........))))))))).)))........ (-41.44 = -41.33 +  -0.11) 

alignment

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secondary structure

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dotplot

Postscript

Window 7

Location 175,980 – 176,100
Length 120
Sequences 3
Columns 120
Reading direction reverse
Mean pairwise identity 96.11
Mean single sequence MFE -35.20
Consensus MFE -32.52
Energy contribution -32.30
Covariance contribution -0.22
Combinations/Pair 1.04
Mean z-score -2.25
Structure conservation index 0.92
SVM decision value 0.92
SVM RNA-class probability 0.882739
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 175980 120 - 23771897
AAUCUCUUAGAGAAACUGCGCAAAACAAAGCGCAAGGCGCAGGAUGACUGCAGUAGCAAGGAGGCGGUCGAUCUAUUACCUCCAACUCCAGCCAUCCCAUCGGUUUUUCCUUUUCACAAU
.........((((((((((((........))))..(((((((.....))))........(((((..((......))..))))).......)))........))))))))........... ( -36.30)
>DroSec_CAF1 9695 120 - 1
AAUCUCUUAGAGAAACUGCGCAAGACGAAGCGCAAGGCACAGGAUGACUGCAAUAGCAAGGAGGCGGUCGAUCUAUUACCUCCAACUCCAGCCAUCCCAUCGGUUUUUCCUUUUCACAAU
.........((((((((((((........))))..(((...(((....(((....))).(((((..((......))..)))))...))).)))........))))))))........... ( -33.00)
>DroYak_CAF1 9907 120 - 1
AAUCUCUUGGAAAAACUGCGCAAGACGAAGCGCAAGGCACAGGAUGACUGCAGUAGCAAGGAGGCAGUCGAUCUAUUACCUCCAACUCCAGCCAUCCCAUCGGUUUUUCCUUUUCACAAU
........(((((((((((((........))))........(((((.(((.(((.....(((((.(((......))).))))).))).))).)))))....))))))))).......... ( -36.30)
>consensus
AAUCUCUUAGAGAAACUGCGCAAGACGAAGCGCAAGGCACAGGAUGACUGCAGUAGCAAGGAGGCGGUCGAUCUAUUACCUCCAACUCCAGCCAUCCCAUCGGUUUUUCCUUUUCACAAU
.........((((((((((((........))))..(((...(((....(((....))).(((((..((......))..)))))...))).)))........))))))))........... (-32.52 = -32.30 +  -0.22) 

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript


Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:30:57 2006