Locus 4898

Sequence ID 3L_DroMel_CAF1
Location 13,638,824 – 13,638,930
Length 106
Max. P 0.783352
window7730

overview

Window 0

Location 13,638,824 – 13,638,930
Length 106
Sequences 6
Columns 107
Reading direction forward
Mean pairwise identity 81.65
Mean single sequence MFE -24.64
Consensus MFE -19.00
Energy contribution -19.42
Covariance contribution 0.42
Combinations/Pair 1.22
Mean z-score -1.75
Structure conservation index 0.77
SVM decision value 0.56
SVM RNA-class probability 0.783352
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 13638824 106 + 23771897
AAAUCGAAUUAGAAUUUGUGUUUUGUGAAUAUUAGGUUGUGUUCACUGUAAGCAUGGGUAAUUCA-AUGAUUUUCCAAGUACAGUUAGCUUGGAAAAUUCUCUUGAC
.....(((((...(((..(((((.((((((((......))))))))...)))))..)))))))).-..((((((((((((.......))))))))))))........ ( -31.20)
>DroPse_CAF1 30666 105 + 1
AAAUCGAAUUAAAAUUUGUAUUUCAUUGUUUUU--UUCGUGUCGGGUGUAAGCAUGGGUAAUUCGGAGCGCUUUUCAGGUACAGUCGGUUUGAAAUAAUUUCUUUUC
(((((((((....))))).)))).........(--((((..((((.(((..((.(.((....)).).))(((.....)))))).))))..)))))............ ( -13.50)
>DroSim_CAF1 56302 106 + 1
AAAUCGAAUUAGAAUUUGUGUUUUGUGAAUAUUAGGUUGUGUUCACUGUAAGCAUGGGUAAUUGA-AUGAUUUUCCAAGUACAGUUAGCUUGGAAAAUUCUCUUGAC
...((((......(((..(((((.((((((((......))))))))...)))))..)))....((-..((((((((((((.......)))))))))))).)))))). ( -29.90)
>DroEre_CAF1 48725 106 + 1
AAAUCGAAUUAGAAUUUGUGUUUUGUGAAUAUUAGAUUGUGUUCACUGUAAGCAUGGGUAAUUCA-AUUAUUUUCCAAGUACGUUUGGCUUGGAAAAUUCUCUUGAC
.....(((((...(((..(((((.((((((((......))))))))...)))))..)))))))).-...(((((((((((.......)))))))))))......... ( -30.00)
>DroYak_CAF1 53475 106 + 1
AAAUCGAAUUAGAAUUUGUGUUUUGUGAAUAUUAGGUUGUGUUUACUGUAAGCAUGGGUAAUUCA-AUGAUUUUCCAAGUACAGUUGGCUUGGAAAAUUCUCUUGAC
.....(((((...(((..(((((.((((((((......))))))))...)))))..)))))))).-..((((((((((((.......))))))))))))........ ( -29.10)
>DroPer_CAF1 30634 105 + 1
AAAUCGAAUUAAAAUUUGUAUUUCAUUGUUUUU--UUCGUGUCGGGUGUAAGCAUGGGUAAUUCGGAGCGCUUUUCAGGUACAGUCGGUUUGAAAUAAUUUUUUUUC
.....(((..((((((................(--((((..((((.(((..((.(.((....)).).))(((.....)))))).))))..))))).))))))..))) ( -14.13)
>consensus
AAAUCGAAUUAGAAUUUGUGUUUUGUGAAUAUUAGGUUGUGUUCACUGUAAGCAUGGGUAAUUCA_AUGAUUUUCCAAGUACAGUUGGCUUGGAAAAUUCUCUUGAC
.....(((((...(((..(((((.((((((((......))))))))...)))))..)))))))).....(((((((((((.......)))))))))))......... (-19.00 = -19.42 +   0.42)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:36:25 2006