Locus 4897

Sequence ID 3L_DroMel_CAF1
Location 13,638,355 – 13,638,475
Length 120
Max. P 0.888867
window7729

overview

Window 9

Location 13,638,355 – 13,638,475
Length 120
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 96.88
Mean single sequence MFE -32.02
Consensus MFE -30.15
Energy contribution -30.65
Covariance contribution 0.50
Combinations/Pair 1.00
Mean z-score -1.16
Structure conservation index 0.94
SVM decision value 0.95
SVM RNA-class probability 0.888867
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 13638355 120 - 23771897
UAACAAUUUUUUCUCGCAAAGGCGCCACGUCCAAGAGCAAAUCGUUCCAUAUGGUUCAUAUUAUUGAAUUGGUCGGCCAGCCGAAGGUUGAGUUUGCUCAACAAGUUACUGUGAGUAUCC
............((((((..(((....((.(((.((((.....))))......(((((......)))))))).))....)))....((((((....)))))).......))))))..... ( -32.80)
>DroPse_CAF1 30142 119 - 1
UGACCAUUUUUUCUCGCAAAGGCGCCACGUCCAAGAGCAAAUCGUUCCAUAUGGUUCAUAUUAUUGAAUUGGUCGGCCAGCCGAAGGUUGAGUUUGCUCAACAAGUUACUGUGAGUAUC-
............((((((..(((....((.(((.((((.....))))......(((((......)))))))).))....)))....((((((....)))))).......))))))....- ( -32.80)
>DroEre_CAF1 48267 120 - 1
UUACAAUUUUUUCUCGCAAAGGCGCCACGUCCAAGAGCAAAUCGUUCCAUAUGGUUCAUAUUAUUGAAUUGGUCGGCCAGCCGAAGGUUGAGUUUGCUCAACAAGUUACUGUGAGUAUCA
............((((((..(((....((.(((.((((.....))))......(((((......)))))))).))....)))....((((((....)))))).......))))))..... ( -32.80)
>DroYak_CAF1 53015 120 - 1
UAACAAUUUUUUCUCGCAAAGGCGCCACGUCCAAGAGCAAAUCGUUCCAUAUGGUUCAUAUUAUUGAAUUGGUCGGCCAGCCGAAGGUUGAGUUUGCUCAACAAGUUACUGUGAGUAUCA
............((((((..(((....((.(((.((((.....))))......(((((......)))))))).))....)))....((((((....)))))).......))))))..... ( -32.80)
>DroAna_CAF1 81595 119 - 1
UGACCAUUUUUUCUCGCAAAGGCGCCACGUCAAAGAGCAAAGCGUUCCAUAUGGUUCAUAUUAUCGAAUUGGUCGGCCAACCGAAGGUUGAGUUUGCUCAACAAGUUACUGUGAGUAUU-
............((((((..((((...))))...(((((((((...(((..((((.......))))...)))...))(((((...)))))..)))))))..........))))))....- ( -28.10)
>DroPer_CAF1 30113 119 - 1
UGACCAUUUUUUCUCGCAAAGGCGCCACGUCCAAGAGCAAAUCGUUCCAUAUGGUUCAUAUUAUUGAAUUGGUCGGCCAGCCGAAGGUUGAGUUUGCUCAACAAGUUACUGUGAGUAUC-
............((((((..(((....((.(((.((((.....))))......(((((......)))))))).))....)))....((((((....)))))).......))))))....- ( -32.80)
>consensus
UGACAAUUUUUUCUCGCAAAGGCGCCACGUCCAAGAGCAAAUCGUUCCAUAUGGUUCAUAUUAUUGAAUUGGUCGGCCAGCCGAAGGUUGAGUUUGCUCAACAAGUUACUGUGAGUAUC_
............((((((..(((....((.(((.((((.....))))......(((((......)))))))).))....)))....((((((....)))))).......))))))..... (-30.15 = -30.65 +   0.50)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:36:23 2006