Locus 4896

Sequence ID 3L_DroMel_CAF1
Location 13,637,293 – 13,637,409
Length 116
Max. P 0.584288
window7728

overview

Window 8

Location 13,637,293 – 13,637,409
Length 116
Sequences 5
Columns 118
Reading direction reverse
Mean pairwise identity 90.46
Mean single sequence MFE -20.58
Consensus MFE -16.04
Energy contribution -16.48
Covariance contribution 0.44
Combinations/Pair 1.04
Mean z-score -1.50
Structure conservation index 0.78
SVM decision value 0.10
SVM RNA-class probability 0.584288
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 13637293 116 - 23771897
UCCGUAAUUAGAAUCAUAAAUCUCCCAAUCAAA--UGAUAGUAGAUUGUGAUUUAUUUUUAUUGUGCUUAGCUGAUAUCCUUUUAUCUGGAUUUCUAUUUUCAACCCGAUUUUAGUCU
......((((((((((((((((...(((((...--........))))).))))))).................((.((((........)))).))............))))))))).. ( -19.20)
>DroSec_CAF1 44749 116 - 1
UCCGUAAUUAGAAUCAUAAAUCUCCCAAUCAAACACGAUAGUAGAUUGUGAUUUAUUUUUAUUGUGCUUAGCUGAUAUCUUUUUAUCUGACUU--UAUUUUCAACCCGAUUUUAGUCU
......((((((((((((((((...(((((..((......)).))))).))))))).....(((.....(((.((((......)))).).)).--......)))...))))))))).. ( -16.20)
>DroSim_CAF1 54763 118 - 1
UCCGUAAUUAGAAUCAUAAAUCUCCCAAUCAAACACGAUAGUAGAUUGUGAUUUAUUUUUAUUGUGCUUAGCUGAUAUCCUUUUAUCUGGCUUUCUAUUUUCAACCCGAUUUUAGUCU
......((((((((((((((((...(((((..((......)).))))).))))))).............((((((((......)))).))))...............))))))))).. ( -19.60)
>DroEre_CAF1 47161 116 - 1
UCCGUAAUUAGAAUCAUAAAUCUCGCAAUCAAU--CGGCAGUAGAUUGUGAUUUAUUUUUAUUCGGCUUUGCUGAUAUCUCUUUAUCUGGCUCGCUGUUUUCAACCCGAUUUUAGUCU
......((((((((((((((((..((((((...--(....)..))))))))))))).......((((...(((((((......)))).)))..))))..........))))))))).. ( -24.80)
>DroYak_CAF1 51905 116 - 1
UCCGUAAUUAGAAUCAUAAAUCCCGCAAUCAAA--CGACACUAGAUUGUGAUUUACUUUUAUUGAGCUCUGCCGAUAUCCUUUUAUCUGGCUUUCUGUUUUCAACCCGAUUUUAGUCU
......(((((((((.((((((..((((((...--........))))))))))))......(((((..(.(((((((......)))).))).....)..)))))...))))))))).. ( -23.10)
>consensus
UCCGUAAUUAGAAUCAUAAAUCUCCCAAUCAAA__CGAUAGUAGAUUGUGAUUUAUUUUUAUUGUGCUUAGCUGAUAUCCUUUUAUCUGGCUUUCUAUUUUCAACCCGAUUUUAGUCU
......((((((((((((((((...(((((.............))))).)))))))..............(((((((......)))).)))................))))))))).. (-16.04 = -16.48 +   0.44)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:36:22 2006