Locus 4894

Sequence ID 3L_DroMel_CAF1
Location 13,633,635 – 13,633,755
Length 120
Max. P 0.780582
window7725

overview

Window 5

Location 13,633,635 – 13,633,755
Length 120
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 89.82
Mean single sequence MFE -24.98
Consensus MFE -22.05
Energy contribution -21.38
Covariance contribution -0.66
Combinations/Pair 1.18
Mean z-score -1.60
Structure conservation index 0.88
SVM decision value 0.56
SVM RNA-class probability 0.780582
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 13633635 120 + 23771897
UAUUAUUUUUGAUAAAUGUUUUUGGGAAAUUUGUAUUUUAUUGGUUGUUUAUCGACAAUUAGCGGUUUUGUGUGCCGAGUUUCCUUUUGCAUAAUGUAAACAUAAUGUAAACAGUCGGCU
........(((((..........(((((((((........(((((((((....))))))))).(((.......))))))))))))(((((((.(((....))).)))))))..))))).. ( -24.40)
>DroPse_CAF1 24847 118 + 1
UAUUAUUUUUGAUAAAUGUUUUUGGGAAAUUUGUAUUUUAUUGGUUGUUUAUCGACAAUUACCGGUUUUGUUUGCCGAGUUUUCCUUGGCAUAAUGUUAACAUUGUGCCCCC--CUCUCU
(((((....))))).........(((((((((.........((((((((....))))))))..(((.......))))))))))))..(((((((((....)))))))))...--...... ( -28.00)
>DroEre_CAF1 43399 120 + 1
UAUUAUUUUUGAUAAAUGUUUUUGGGAAAUUUGUAUUUUAUUGGUUGUUUAUCGACAAUUAGCGGUUUUGUGUGCCGAGUUUCCUUUUGCAUAAUGUAAACAUAAUGUAAACAGUCGGCU
........(((((..........(((((((((........(((((((((....))))))))).(((.......))))))))))))(((((((.(((....))).)))))))..))))).. ( -24.40)
>DroYak_CAF1 48139 120 + 1
UAUUAUUUUUGAUAAAUGUUUUUGGGAAAUUUGUAUUUUAUUGGUUGUUUAUCGACAAUUAGCGGUUUUGUGUGCCGAGUUUCCUUUUGCAUAAUGUAAACAAUAUGUAAACAGUCGGCU
........(((((..........(((((((((........(((((((((....))))))))).(((.......))))))))))))((((((((.((....)).))))))))..))))).. ( -24.60)
>DroAna_CAF1 76997 119 + 1
UAUUAUUUUUGAUAAAUGUUUUUGGGAAAUUUGUAUUUUAUUGGUUGUUUAUCGACAAUUAGCGGUU-UGUUUGCCGGGCUUCCCUAUGCAUAAUAUAAACAUAAUGUAAACACUUGGCU
((((((.((((....((((....(((((............(((((((((....)))))))))((((.-.....))))...)))))...))))....)))).))))))............. ( -22.20)
>DroPer_CAF1 24778 117 + 1
UAUUAUUUUUGAUAAAUGUUUUUGGGA-AUUUGUAUUUUAUUGGUUGUUUAUCGACAAUUAGCGGUUUUGUUUGCCGAGUUUUCCUUGGCAUAAUGUUAACAUUGUGCCCCC--CUCUCU
(((((....))))).........((((-(...........(((((((((....)))))))))((((.......))))....))))).(((((((((....)))))))))...--...... ( -26.30)
>consensus
UAUUAUUUUUGAUAAAUGUUUUUGGGAAAUUUGUAUUUUAUUGGUUGUUUAUCGACAAUUAGCGGUUUUGUGUGCCGAGUUUCCCUUUGCAUAAUGUAAACAUAAUGUAAACAGUCGGCU
(((((....))))).........((((((((.........(((((((((....)))))))))((((.......))))))))))))..(((((.(((....))).)))))........... (-22.05 = -21.38 +  -0.66)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:36:20 2006