Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 13,629,562 – 13,629,658 |
Length | 96 |
Max. P | 0.823056 |
Location | 13,629,562 – 13,629,658 |
---|---|
Length | 96 |
Sequences | 6 |
Columns | 96 |
Reading direction | reverse |
Mean pairwise identity | 95.07 |
Mean single sequence MFE | -22.71 |
Consensus MFE | -21.32 |
Energy contribution | -21.68 |
Covariance contribution | 0.36 |
Combinations/Pair | 1.04 |
Mean z-score | -1.09 |
Structure conservation index | 0.94 |
SVM decision value | 0.69 |
SVM RNA-class probability | 0.823056 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 13629562 96 - 23771897 UUGCGGCUGGUAUUUUGUCGUUUGUUAAAAGUUUUCAACACUCAUUUUUAUUAUGACAUACGCGCGAAGUACGAGCCAAAUUAGUGGCAAAUUCAG ....((((.((((((((((((.(((((.((....................)).))))).))).))))))))).))))................... ( -23.85) >DroSec_CAF1 37044 96 - 1 UUGCGGCUGGUAUUUUGUCGUUUGUUAAAAGUUUUCAACACUCAUUUUUAUUAUGACAUACGCGCGAAGUACGAGCCAAAUUAGUGGCAAAUUCAG ....((((.((((((((((((.(((((.((....................)).))))).))).))))))))).))))................... ( -23.85) >DroSim_CAF1 46853 96 - 1 UUGCGGCUGGUAUUUUGUCGUUUGUUAAAAGUUUUCAACACUCAUUUUUAUUAUGACAUACGCGCGAAGUACGAGCCAAAUUAGUGGCAAAUUCAG ....((((.((((((((((((.(((((.((....................)).))))).))).))))))))).))))................... ( -23.85) >DroEre_CAF1 39340 96 - 1 CUGCGGCUGGUAUUUUGUCGUUUGUUAAAAGUUUUCAACACUCAUUUUUAUUAUGACAUACGCGCGAAGUACGAUCCAAAUUAGUGGCAAAUUCAG .(((.((((((((((((((((.(((((.((....................)).))))).))).))))))))).........)))).)))....... ( -19.25) >DroYak_CAF1 43893 96 - 1 CUGCGGCUGGUAUUUUGUCGUUUGUUAAAAGUUUUCAACACUCAUUUUUAUUAUGACAUACGCGCGAAGUACGAGCCAAAUUAGUGGCAAAUUCAG ....((((.((((((((((((.(((((.((....................)).))))).))).))))))))).))))................... ( -23.85) >DroAna_CAF1 73178 96 - 1 GUGCGGCUGGUAUUUUGUCGUUUGUUAAAAGUUUUCAACACUCAUUUUUAUUAUGACAUACGCGAGAUGUACAGGCCAAAUUAGUGGGGGUGGCGG (((((.((.((....((((((....(((((((...........)))))))..))))))...)).)).)))))..((((..((....))..)))).. ( -21.60) >consensus UUGCGGCUGGUAUUUUGUCGUUUGUUAAAAGUUUUCAACACUCAUUUUUAUUAUGACAUACGCGCGAAGUACGAGCCAAAUUAGUGGCAAAUUCAG ....((((.((((((((((((.(((((.((....................)).))))).))).))))))))).))))................... (-21.32 = -21.68 + 0.36)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:36:15 2006