| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 1,375,500 – 1,375,599 |
| Length | 99 |
| Max. P | 0.985297 |
| Location | 1,375,500 – 1,375,599 |
|---|---|
| Length | 99 |
| Sequences | 5 |
| Columns | 100 |
| Reading direction | forward |
| Mean pairwise identity | 93.32 |
| Mean single sequence MFE | -26.90 |
| Consensus MFE | -21.40 |
| Energy contribution | -21.84 |
| Covariance contribution | 0.44 |
| Combinations/Pair | 1.05 |
| Mean z-score | -2.63 |
| Structure conservation index | 0.80 |
| SVM decision value | 2.00 |
| SVM RNA-class probability | 0.985297 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 1375500 99 + 23771897 CACAGUCCUCACUGGUCUGGAUGAAACCACAGUCCAGAGCAAGGGAAACCAGUCUGCAAAUAGACACAGCAA-ACUUCACAAAACUUCCGACGGGCAAAA ....((((((.((((.(((..........))).)))).((..((....)).(((((....)))))...))..-................)).)))).... ( -28.90) >DroSec_CAF1 31073 98 + 1 CACAGUCUUCAAUGGUCUGGAUGAAACCACAGUCCAGAGCAAGGGAAACCAGUCUGCAAAUAGACACAGCAA-GCUUCACAA-ACUUCCGACGGGCAAAA ....((((((..((.(((((((.........))))))).)).((....)).(((((....))))).......-.........-......)).)))).... ( -25.10) >DroSim_CAF1 28403 98 + 1 CACAGUCUUCAAUGGUCUGGAUGAAACCACAGUCCAGAGCAAGGGAAGCCAGUCUGCAAAUAGACACAGCAA-ACUUCACAA-ACUUCCGACGGGCAAAA ....((((((..((.(((((((.........))))))).))..(((((...(((((....)))))..((...-.))......-.))))))).)))).... ( -24.70) >DroEre_CAF1 32114 99 + 1 CGCAGUCUUCAAUGGUCUGGAUGAAACCACAGUCCAGAGCAAGGGAGACAAGUCUGCAAAUAGACACUGCAAAACUUCGCAA-ACUUCCGAUGGGCAAAG .(((((((((..((.(((((((.........))))))).))..))))))..(((((....)))))..)))....(((.((..-.(.......).)).))) ( -30.40) >DroYak_CAF1 33544 98 + 1 CACCAUCUUCAAUGGUCUGGAUGAAACCACAGUCCAGAGCAAGGGAGACAAGUCUGCAAAUAGACACUGCAA-ACUUCACAA-ACUUCCGACGGGCAAAA ..((.((.....((.(((((((.........))))))).)).(((((..((((.((((.........)))).-)))).....-.))))))).))...... ( -25.40) >consensus CACAGUCUUCAAUGGUCUGGAUGAAACCACAGUCCAGAGCAAGGGAAACCAGUCUGCAAAUAGACACAGCAA_ACUUCACAA_ACUUCCGACGGGCAAAA ....((((((..((.(((((((.........))))))).)).((....)).(((((....)))))........................)).)))).... (-21.40 = -21.84 + 0.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:43:14 2006