Locus 4889

Sequence ID 3L_DroMel_CAF1
Location 13,628,841 – 13,628,932
Length 91
Max. P 0.998733
window7718

overview

Window 8

Location 13,628,841 – 13,628,932
Length 91
Sequences 6
Columns 99
Reading direction forward
Mean pairwise identity 94.38
Mean single sequence MFE -22.45
Consensus MFE -20.59
Energy contribution -20.78
Covariance contribution 0.20
Combinations/Pair 1.05
Mean z-score -2.41
Structure conservation index 0.92
SVM decision value 3.20
SVM RNA-class probability 0.998733
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 13628841 91 + 23771897
--------CCCUCAGUUUUUGUUGCUGCAUAUUUUCCAGAGCAUAAAUAUUUUAUGCAUGCAACAAAGGCAGUCAAAACACAAUGGCCAAAAAAGUUGG
--------((..(.(((((((((((((((((.....................)))))).))))))))))).((((........)))).......)..)) ( -22.30)
>DroSec_CAF1 36317 91 + 1
--------CCCUCCGUUUUUGUUGCUGCAUAUUUUCCAGAGCAUAAAUAUUUUAUGCAUGCAACAAAGGCAGUCAAAACACAAUGGCCAAAAAAGUUGG
--------.((..((((((((((((((((((.....................)))))).))))))))))).((((........)))).......)..)) ( -22.80)
>DroSim_CAF1 46126 91 + 1
--------CCCUCCGUUUUUGUUGCUGCAUAUUUUCCAGAGCAUAAAUAUUUUAUGCAUGCAACAAAGGCAGUCAAAACACAAUGGCCAAAAAAGUUGG
--------.((..((((((((((((((((((.....................)))))).))))))))))).((((........)))).......)..)) ( -22.80)
>DroEre_CAF1 38605 91 + 1
--------CCCUCCGUUUUUGUUGCUGCAUAUUUUCCAGAGCAUAAAUAUUUUAUGCAUGCAACAAAGGCAGUCAAAACACAAUGGCCAAAAAAGUUGG
--------.((..((((((((((((((((((.....................)))))).))))))))))).((((........)))).......)..)) ( -22.80)
>DroYak_CAF1 43137 91 + 1
--------CCCUCCGUUUUUGUUGCUGCAUAUUUUCCAGAGCAUAAAUAUUUUAUGCAUGCAACAAAGGCAGUCAAAACACAAUGGCCAAAAAAGUUGG
--------.((..((((((((((((((((((.....................)))))).))))))))))).((((........)))).......)..)) ( -22.80)
>DroAna_CAF1 72341 98 + 1
UGUAUUUGCCUUCGCUUUUUGUUGCUGCAUAUUUUCCAGCGCAUAAAUAUUUUAUGCAUGCAACAAAGGCAUCCAAAACACAAUGGCCAAA-AAGUUGG
......((((((.......((((((.((..........))((((((.....))))))..)))))))))))).(((........)))((((.-...)))) ( -21.21)
>consensus
________CCCUCCGUUUUUGUUGCUGCAUAUUUUCCAGAGCAUAAAUAUUUUAUGCAUGCAACAAAGGCAGUCAAAACACAAUGGCCAAAAAAGUUGG
..............(((((((((((((((((.....................)))))).))))))))))).((((........))))............ (-20.59 = -20.78 +   0.20)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:36:13 2006