Locus 4888

Sequence ID 3L_DroMel_CAF1
Location 13,625,253 – 13,625,365
Length 112
Max. P 0.523392
window7717

overview

Window 7

Location 13,625,253 – 13,625,365
Length 112
Sequences 6
Columns 112
Reading direction reverse
Mean pairwise identity 96.48
Mean single sequence MFE -32.38
Consensus MFE -28.82
Energy contribution -28.68
Covariance contribution -0.14
Combinations/Pair 1.03
Mean z-score -1.15
Structure conservation index 0.89
SVM decision value -0.02
SVM RNA-class probability 0.523392
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 13625253 112 - 23771897
AAGCAAAUGCAUUUUAGUGCCCUCAGUUGACCUCGUUUGGGGCUUGUUUUUAUGGCUCAGGCGAAGCCAAAGCGAUGAUGCUACUCACGUGGCUCAAAACUAAAAGCUCCCC
........((.(((((((((((.(((.((....)).)))))))((((((...((((((....).)))))))))))(((.(((((....))))))))..)))))))))..... ( -32.30)
>DroPse_CAF1 15744 108 - 1
AAGCAAAUGCAUUUUAGUGCCCUCAGUUGACCUCGUUUGGGGCUUGUUUUUAUGGCC----CGAAGCCCAAGCGAUGAUGCUACUCACGUGGCUCAAAACUAAAAGCUCCCC
........((.(((((((..............(((((((((.((((((.....))).----..))))))))))))(((.(((((....))))))))..)))))))))..... ( -29.80)
>DroEre_CAF1 34958 112 - 1
AAGCAAAUGCAUUUUAGUGCCCUCAGUUGACCUCGUUUGGGGCUUGUUUUUAUGGCUCGGGCGAAGCCAAAGCGAUGAUGCUACUCACGUGGCUCAAAACUAAAAGCUCCCC
........((.(((((((((((.(((.((....)).)))))))((((((...((((((....).)))))))))))(((.(((((....))))))))..)))))))))..... ( -32.80)
>DroYak_CAF1 39382 112 - 1
AAGCAAAUGCAUUUUAGUGCCCUCAGUUGACCUCGUUUGGGGCUUGUUUUUAUGGCUCAGGCGAAGCCAAAGCGAUGAUGCUACUCACGUGGCUCAAAACUAAAAGCUCCCC
........((.(((((((((((.(((.((....)).)))))))((((((...((((((....).)))))))))))(((.(((((....))))))))..)))))))))..... ( -32.30)
>DroAna_CAF1 68689 112 - 1
AAGCAAAUGCAUUUUAGUGCCCUCAGUUGACCUCGUUUGGGGCUUGUUUUUAUGGCCCGGGCGAAGCCCAGGCGAUGAUGCUACUCACGUGGCUCAAAACUAAAAGCUCCCC
........((.(((((((((((.(((.((....)).)))))))......((((.(((.((((...)))).))).)))).(((((....))))).....)))))))))..... ( -37.30)
>DroPer_CAF1 15731 108 - 1
AAGCAAAUGCAUUUUAGUGCCCUCAGUUGACCUCGUUUGGGGCUUGUUUUUAUGGCC----CGAAGCCCAAGCGAUGAUGCUACUCACGUGGCUCAAAACUAAAAGCUCCCC
........((.(((((((..............(((((((((.((((((.....))).----..))))))))))))(((.(((((....))))))))..)))))))))..... ( -29.80)
>consensus
AAGCAAAUGCAUUUUAGUGCCCUCAGUUGACCUCGUUUGGGGCUUGUUUUUAUGGCCC_GGCGAAGCCAAAGCGAUGAUGCUACUCACGUGGCUCAAAACUAAAAGCUCCCC
........((.(((((((((((.(((.((....)).)))))))((((((....(((.........))).))))))(((.(((((....))))))))..)))))))))..... (-28.82 = -28.68 +  -0.14)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:36:12 2006