Locus 4884

Sequence ID 3L_DroMel_CAF1
Location 13,619,499 – 13,619,594
Length 95
Max. P 0.599887
window7712

overview

Window 2

Location 13,619,499 – 13,619,594
Length 95
Sequences 4
Columns 101
Reading direction reverse
Mean pairwise identity 86.90
Mean single sequence MFE -30.70
Consensus MFE -23.01
Energy contribution -24.45
Covariance contribution 1.44
Combinations/Pair 1.07
Mean z-score -1.52
Structure conservation index 0.75
SVM decision value 0.13
SVM RNA-class probability 0.599887
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 13619499 95 - 23771897
UUUCAUCAACUGCCGCGGCGGCGAUGUGAGUUAC------ACGUUCAAUGUGAGUGUGUGAGUGUGUGCCAGAGAUACAUUUUCAAGUGUACACACGCUGC
..............((((((..........((((------((((((.....))))))))))(((((..(..((((.....))))..)..))))).)))))) ( -30.30)
>DroSec_CAF1 26427 93 - 1
UUUCAUCAACUGCCGCGGCGGCGAUGUGAGUUACACUUACACGUUCAAUG--------UGAGUGUGUGCCAGAGAUACAUUUUCAAGUGUACACACGCUGC
..............(((((((((.((((((.....)))))))))......--------...(((((..(..((((.....))))..)..))))).)))))) ( -30.00)
>DroSim_CAF1 35518 101 - 1
UUUCAUCAACUGCCGCGGCGGCGAUGUGAGUUACACUUAUACGUUCACUGUGGGUGUGUGAGUGUGUGCCAGAGAUACAUUUUCAAGUGUACACACGCUGC
.................((((((.((((...((((((((((((..(.....)..)))))))))))).........((((((....)))))))))))))))) ( -34.60)
>DroEre_CAF1 29213 94 - 1
UUUCAUCAACUGCCGCGGCGGCGAUGUGAGAUACACUUUCGCGUUCAAAGUGUGU------GUG-GUGCCAGAGAUACAUUUUCAAGAGUACACACGCUGC
.........((((....)))).(((((((((.....)))))))))...(((((((------(((-.(.(..((((.....))))..)).)))))))))).. ( -27.90)
>consensus
UUUCAUCAACUGCCGCGGCGGCGAUGUGAGUUACACUUACACGUUCAAUGUG_GU___UGAGUGUGUGCCAGAGAUACAUUUUCAAGUGUACACACGCUGC
..............(((((((((.((((((.....))))))))))................(((((((((.((((.....))))..).))))))))))))) (-23.01 = -24.45 +   1.44)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:36:07 2006