Locus 4882

Sequence ID 3L_DroMel_CAF1
Location 13,618,463 – 13,618,569
Length 106
Max. P 0.581084
window7708

overview

Window 8

Location 13,618,463 – 13,618,569
Length 106
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 82.35
Mean single sequence MFE -31.12
Consensus MFE -20.18
Energy contribution -20.43
Covariance contribution 0.25
Combinations/Pair 1.04
Mean z-score -1.80
Structure conservation index 0.65
SVM decision value 0.10
SVM RNA-class probability 0.581084
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 13618463 106 - 23771897
CACGCUCA-GACACUGACAC--AUACUGGCAAAUACACAUGAGUGCGUGUUUGUUGCCCUUAACAGACAUUUUCACAGUUGAGUGCGUUGUUUGGGCUCAGCCUCACCU-----------
...(((((-((((.((.(((--..(((((((..((....))..)))((((((((((....)))))))))).....))))...))))).)))))))))............----------- ( -31.20)
>DroPse_CAF1 8209 113 - 1
CACACACA-GAGAAUCACAU--ACA----CAAAUACACAUGAGUGCGUGUUUGUUGCCCUUAACAGACAUUUUCACAGUUGAGUGCGUUGUUUGGGCCCAGCCUCUUCUGAAUCUCCUGA
......((-((((.(((...--..(----(((((((.((....)).)))))))).((((..(((((.(((((........)))))..))))).))))...........))).))).))). ( -28.10)
>DroSim_CAF1 34491 105 - 1
CACGCUCA-GACACUGACAC--ACACUGGCAAAUACACAUGAGUGCGUGUUUGUUGCCCUUAACAGACAUUUUCACAGUUGAGUGCGUUGUUUGGGCUCAGCCUCGU-C-----------
...(((((-((((.((.(((--.((((((((..((....))..)))((((((((((....)))))))))).....))).)).))))).)))))))))..........-.----------- ( -31.40)
>DroEre_CAF1 28193 108 - 1
CACGCUCA-GACACUGACACACACACUGGCAAAUACACAUGAGUGCGUGUUUGUUGCCCUUAACAGACAUUUUCACAGUUGAGUGCGUUGUUUGGGCCCCAUUCCUUCU-----------
...(((((-((((.((.(((.((.(((((((..((....))..)))((((((((((....)))))))))).....)))))).))))).)))))))))............----------- ( -31.90)
>DroAna_CAF1 61653 105 - 1
CGAGCCAGGGCCACUGACAC----ACUCACAAAUACACAUGAGUGCGUGUUUGUUGCCCUUAACAGACAUUUUCACAGUUGAGUGCGUUGUUUGGGCUCAGCUUCUCCG-----------
.((((((((((.((.(((((----(((((..........)))))..))))).)).)))))...((((((....(((......)))...)))))))))))..........----------- ( -37.00)
>DroPer_CAF1 8195 113 - 1
CACACACA-GAGAAUCACAU--ACA----CAAAUACACAUGAGUGCGUGUUUGUUGCCCUUAACAGACAUUUUCACAGUUGAGUGCGUUGUUUGGGCCCAGCCUCUUCUGAAUCUCCCGA
........-((((.(((...--..(----(((((((.((....)).)))))))).((((..(((((.(((((........)))))..))))).))))...........))).)))).... ( -27.10)
>consensus
CACGCUCA_GACACUGACAC__ACACUGGCAAAUACACAUGAGUGCGUGUUUGUUGCCCUUAACAGACAUUUUCACAGUUGAGUGCGUUGUUUGGGCCCAGCCUCUUCU___________
............................((((((((.((....)).)))))))).((((..(((((.(((((........)))))..))))).))))....................... (-20.18 = -20.43 +   0.25)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:36:03 2006