Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 13,617,054 – 13,617,166 |
Length | 112 |
Max. P | 0.762729 |
Location | 13,617,054 – 13,617,166 |
---|---|
Length | 112 |
Sequences | 6 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 93.26 |
Mean single sequence MFE | -25.10 |
Consensus MFE | -23.33 |
Energy contribution | -22.75 |
Covariance contribution | -0.58 |
Combinations/Pair | 1.09 |
Mean z-score | -1.13 |
Structure conservation index | 0.93 |
SVM decision value | 0.51 |
SVM RNA-class probability | 0.762729 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 13617054 112 - 23771897 -------GGGGCGUAAAAUUAAAUUUACAUAAUUUAUGACUUGCUCAGCAAUGUU-CAUGGGCGUUGUGUUGCAUAAUUUUAGGCAUUUUUGUUUAUUGCGGCGUAAAAUUUGAAUUAUG -------.....(((((......)))))((((((((....((((...((((((((-....))))))))((((((......((((((....)))))).))))))))))....)))))))). ( -25.90) >DroPse_CAF1 6838 120 - 1 GGUUGGGUGGGAGUUAAAUUAAAUUUACAUAAUUUAUGACUUACUCAGCAGUGUUCCAUGGGCGUUGUGUUGCAUAAUUUUAGGCAUUUUUGUUUAUUGCGGCGUAAAAUUUGAAUUAUG .((((((((((...(((((((........)))))))...))))))))))...(((.....))).((((((((((......((((((....)))))).))))))))))............. ( -26.40) >DroSec_CAF1 24026 112 - 1 -------GUGGCGUAAAAUUAAAUUUACAUAAUUUAUGACUUGCUCAGCAAUGUU-CAUGGGCGUUGUGUUGCAUAAUUUUAGGCAUUUUUGUUUAUUGCGGCGUAAAAUUUGAAUUAUG -------.....(((((......)))))((((((((....((((...((((((((-....))))))))((((((......((((((....)))))).))))))))))....)))))))). ( -25.90) >DroYak_CAF1 31215 112 - 1 -------GGGGCGUAAAAUUAAAUUUACAUAAUUUAUGACUUGCUCAGCAAUGUU-CAUGGGCGUUGUGUUGCAUAAUUUUAGGCAUUUUUGUUUAUUGCGGCGUAAAAUUUGAAUUAUG -------.....(((((......)))))((((((((....((((...((((((((-....))))))))((((((......((((((....)))))).))))))))))....)))))))). ( -25.90) >DroAna_CAF1 60408 111 - 1 --------GGGCGUAAAAUUAAAUUUACAUAAUUUAUGACUUGCUCAGCAAUGUU-CAUGGGUGUUGUGUUGCAUAAUUUUAGGCAUUUUUGUUUAUUGCGGCGUAAAAUUUGAAUUAUG --------....(((((......)))))((((((((....((((...((((..((-....))..))))((((((......((((((....)))))).))))))))))....)))))))). ( -22.70) >DroPer_CAF1 6779 120 - 1 GGUUGGUUGGGAGUUAAAUUAAAUUUACAUAAUUUAUGACUUACUCAGCAGUGUUCCAUGGGCGUUGUGUUGCAUAAUUUUAGGCAUUUUUGUUUAUUGCGGCGUAAAAUUUGAAUUAUG ..((((((........)))))).....(((((((((....((((...((((((((.....))))))))((((((......((((((....)))))).))))))))))....))))))))) ( -23.80) >consensus _______GGGGCGUAAAAUUAAAUUUACAUAAUUUAUGACUUGCUCAGCAAUGUU_CAUGGGCGUUGUGUUGCAUAAUUUUAGGCAUUUUUGUUUAUUGCGGCGUAAAAUUUGAAUUAUG ...........................(((((((((....((((...((((((((.....))))))))((((((......((((((....)))))).))))))))))....))))))))) (-23.33 = -22.75 + -0.58)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:35:59 2006