Locus 4879

Sequence ID 3L_DroMel_CAF1
Location 13,615,789 – 13,615,892
Length 103
Max. P 0.715480
window7703

overview

Window 3

Location 13,615,789 – 13,615,892
Length 103
Sequences 4
Columns 108
Reading direction forward
Mean pairwise identity 95.12
Mean single sequence MFE -25.27
Consensus MFE -23.08
Energy contribution -23.20
Covariance contribution 0.12
Combinations/Pair 1.06
Mean z-score -1.62
Structure conservation index 0.91
SVM decision value 0.39
SVM RNA-class probability 0.715480
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 13615789 103 + 23771897
GACGAUGAUGAUAGUUUGGAAAAUGGUUUCGAAUUGAGUGGCCCCGGCAACUUUUGUUGAUAGAAAAGUAAUAUUUUAUGGGGUUAGCUUGAGGGUAAACUG-----A
...........(((((((((((....))))...(..(((((((((..((((....))))((((((.(....).))))))))))))).))..)...)))))))-----. ( -24.20)
>DroSec_CAF1 22784 103 + 1
GACGAUGAUGAUAGUUUGGAAAAUGGUUUCGAAUUGAGUGGCCCCAGAAACUUUUGUUGAUAGAAAAGUAAUAUUUUAUGGGGUUAGCUCGAGGGUAAACUG-----A
...........(((((((((((....))))...((((((((((((((((((((((.(....).)))))).....))).)))))))).)))))...)))))))-----. ( -24.00)
>DroEre_CAF1 25623 104 + 1
GACGAUGAUGAUAGUUUGGAAAAUGGUUUCGAAUUGAGUGGCCCCGGCAACUUUUGUUGAUAGAAAAGUAAUAUUUUAUGGGGUUAGCUCGAGGGUAAACUGA----A
...........(((((((((((....))))...((((((((((((..((((....))))((((((.(....).))))))))))))).)))))...))))))).----. ( -26.40)
>DroYak_CAF1 29938 108 + 1
GACGAUGAUGAUAGUUUGGAAAAUGGUUUCGAAUUGAGUGGCCCCGGCAACUUUUGUUGAUAGAAAAGUAAUAUUUUAUGGGGUUAGCUCGAGGGUAAGCUCAACUGA
............(((((((((.....)))))))))((((((((((..((((....))))((((((.(....).))))))))))))).)))(((......)))...... ( -26.50)
>consensus
GACGAUGAUGAUAGUUUGGAAAAUGGUUUCGAAUUGAGUGGCCCCGGCAACUUUUGUUGAUAGAAAAGUAAUAUUUUAUGGGGUUAGCUCGAGGGUAAACUG_____A
...........(((((((((((....))))...((((((((((((..((((....))))((((((........))))))))))))).)))))...)))))))...... (-23.08 = -23.20 +   0.12)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:35:58 2006