Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 13,614,526 – 13,614,619 |
Length | 93 |
Max. P | 0.747326 |
Location | 13,614,526 – 13,614,619 |
---|---|
Length | 93 |
Sequences | 5 |
Columns | 102 |
Reading direction | forward |
Mean pairwise identity | 84.25 |
Mean single sequence MFE | -25.22 |
Consensus MFE | -16.01 |
Energy contribution | -15.61 |
Covariance contribution | -0.40 |
Combinations/Pair | 1.09 |
Mean z-score | -2.19 |
Structure conservation index | 0.63 |
SVM decision value | 0.47 |
SVM RNA-class probability | 0.747326 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 13614526 93 + 23771897 UGCAAAAAUCAGUGCAGUCUGCACAUAUACGU------AUACGUAUACGUUAUACGUACGUAUUGAUCAGGCCAGU---CAAUGCCGUGUUGAUGAAGCCUG .......((((((((.....))))..((((((------..(((((((...)))))))))))))))))(((((..((---((((.....))))))...))))) ( -29.10) >DroSec_CAF1 21547 78 + 1 UGCAGAAAUCAGUGCAGUCUGCACACAUACGA------ACAC---------------ACGUAUUGAUCAGGCCAGU---CAAUGCCGUGUUGAUGAAGCCUG .......((((((((.....))))..(((((.------....---------------.)))))))))(((((..((---((((.....))))))...))))) ( -22.20) >DroSim_CAF1 30630 78 + 1 UGCAGAAAUCAGUGCAGUCUGCACAUAUACGU------ACAC---------------ACGUAUUGAUCAGGCCAGU---CAAUGCCGUGUUGAUGGAGCCUG .......((((((((.....))))..((((((------....---------------))))))))))((((((.((---((((.....)))))).).))))) ( -23.60) >DroEre_CAF1 24303 81 + 1 UGCAAAAAUCAGUGCAGCCUGCACAUAUACGU------AUAC---------------ACGUAUUGAUCAGGCCAGUCGUCAAUGGCGUGUUGAUGAAGCCUG .......((((((((.....))))..((((((------....---------------))))))))))(((((...((((((((.....)))))))).))))) ( -26.70) >DroYak_CAF1 28623 84 + 1 UGCAAAAAUCAGUGCAGCUUGCACAUAUACGUAUACGUAUAC---------------UCGUAUUGAUCAGGCCAGU---CAAUGCCGUGUUGAUGAAGCCUG .......((((((((.....)))).((((((....)))))).---------------......))))(((((..((---((((.....))))))...))))) ( -24.50) >consensus UGCAAAAAUCAGUGCAGUCUGCACAUAUACGU______AUAC_______________ACGUAUUGAUCAGGCCAGU___CAAUGCCGUGUUGAUGAAGCCUG .((....(((((..(.(((((..((.(((((...........................)))))))..)))))((........))..)..)))))...))... (-16.01 = -15.61 + -0.40)
Location | 13,614,526 – 13,614,619 |
---|---|
Length | 93 |
Sequences | 5 |
Columns | 102 |
Reading direction | reverse |
Mean pairwise identity | 84.25 |
Mean single sequence MFE | -23.06 |
Consensus MFE | -15.75 |
Energy contribution | -15.75 |
Covariance contribution | 0.00 |
Combinations/Pair | 1.00 |
Mean z-score | -1.71 |
Structure conservation index | 0.68 |
SVM decision value | 0.07 |
SVM RNA-class probability | 0.570506 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 13614526 93 - 23771897 CAGGCUUCAUCAACACGGCAUUG---ACUGGCCUGAUCAAUACGUACGUAUAACGUAUACGUAU------ACGUAUAUGUGCAGACUGCACUGAUUUUUGCA ((((((...((((.......)))---)..))))))((((....(((((((((.((....)))))------))))))..((((.....))))))))....... ( -28.00) >DroSec_CAF1 21547 78 - 1 CAGGCUUCAUCAACACGGCAUUG---ACUGGCCUGAUCAAUACGU---------------GUGU------UCGUAUGUGUGCAGACUGCACUGAUUUCUGCA ((((((...((((.......)))---)..))))))(((((((((.---------------....------.)))))..((((.....))))))))....... ( -20.80) >DroSim_CAF1 30630 78 - 1 CAGGCUCCAUCAACACGGCAUUG---ACUGGCCUGAUCAAUACGU---------------GUGU------ACGUAUAUGUGCAGACUGCACUGAUUUCUGCA ((((((...((((.......)))---)..))))))((((((((((---------------....------))))))..((((.....))))))))....... ( -20.80) >DroEre_CAF1 24303 81 - 1 CAGGCUUCAUCAACACGCCAUUGACGACUGGCCUGAUCAAUACGU---------------GUAU------ACGUAUAUGUGCAGGCUGCACUGAUUUUUGCA ((((((((.((((.......)))).))..))))))((((((((((---------------....------))))))..((((.....))))))))....... ( -22.00) >DroYak_CAF1 28623 84 - 1 CAGGCUUCAUCAACACGGCAUUG---ACUGGCCUGAUCAAUACGA---------------GUAUACGUAUACGUAUAUGUGCAAGCUGCACUGAUUUUUGCA ((((((...((((.......)))---)..))))))((((......---------------(((((((....)))))))((((.....))))))))....... ( -23.70) >consensus CAGGCUUCAUCAACACGGCAUUG___ACUGGCCUGAUCAAUACGU_______________GUAU______ACGUAUAUGUGCAGACUGCACUGAUUUUUGCA ((((((....(((.......)))......))))))(((((((((...........................)))))..((((.....))))))))....... (-15.75 = -15.75 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:35:54 2006