| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 13,613,500 – 13,613,618 |
| Length | 118 |
| Max. P | 0.887534 |
| Location | 13,613,500 – 13,613,618 |
|---|---|
| Length | 118 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 77.50 |
| Mean single sequence MFE | -21.68 |
| Consensus MFE | -13.90 |
| Energy contribution | -14.01 |
| Covariance contribution | 0.11 |
| Combinations/Pair | 1.05 |
| Mean z-score | -1.77 |
| Structure conservation index | 0.64 |
| SVM decision value | 0.95 |
| SVM RNA-class probability | 0.887534 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 13613500 118 - 23771897 AAGGGCUCGCCCACUUCCCCACUUACCCACUUGCCCACUC--ACGGUUAUAUAAAGCAAUUGAAUUUUGCAGUUAAAAGCUUCAAUCAUUUUCAAUUGCCGCAAACUAAUGGCUGAUUAU ..((((..........................))))....--.(((((((.....(((((((((..(((.(((.....))).))).....))))))))).........)))))))..... ( -22.61) >DroPse_CAF1 2597 101 - 1 -----------------CUCGCUCUCCCAGCCACUCCCUG--AUGGUUAUAUAAAGCAAUUGAAUUUUGCAGUUAAAAGCUUCAAUCAUUUUCAAUUGCCGCAAACUAAUGGCUGAUUAU -----------------..........((((((...((..--..)).........(((((((((..(((.(((.....))).))).....)))))))))..........))))))..... ( -23.30) >DroEre_CAF1 23288 109 - 1 AAGGGCUUGUCCACUUU---------CCACUUUCCCACUC--ACGGUUAUAUAAAGCAAUUGAAUUUUGCAGUUAAAAGCUUCAAUCAUUUUCAAUUGCCGCAAACUAAUGGCUGAUUAU ..(((...((.......---------..))...)))....--.(((((((.....(((((((((..(((.(((.....))).))).....))))))))).........)))))))..... ( -19.34) >DroYak_CAF1 27594 104 - 1 AAGGACUCGCCCACU----------------UUCCCACUCACACGGUUAUAUAAAGCAAUUGAAUUUUGCAGUUAAAAGCUUCAAUCAUUUUCAAUUGCCGCAAACUAAUGGCUGAUUAU ..((......))...----------------............(((((((.....(((((((((..(((.(((.....))).))).....))))))))).........)))))))..... ( -17.54) >DroAna_CAF1 56866 102 - 1 ACGGGCCCGCCUGG----------------GCACCCAAUC--ACGGUUAUAUAAAGCAAUUUAAUUUUGCAGUUAAAAGCUCCAAUCGUUUUCAAUUGCCGCAAACUAAUGGCAGAUUAU ..((((((....))----------------)).)).((((--((((((.......((((.......))))(((.....)))..)))))).......(((((........))))))))).. ( -24.00) >DroPer_CAF1 2633 101 - 1 -----------------CUCGCUCUCCCAGCCACUCCCUG--AUGGUUAUAUAAAGCAAUUGAAUUUUGCAGUUAAAAGCUUCAAUCAUUUUCAAUUGCCGCAAACUAAUGGCUGAUUAU -----------------..........((((((...((..--..)).........(((((((((..(((.(((.....))).))).....)))))))))..........))))))..... ( -23.30) >consensus AAGGGCUCGCCCAC____________CCA_CCACCCACUC__ACGGUUAUAUAAAGCAAUUGAAUUUUGCAGUUAAAAGCUUCAAUCAUUUUCAAUUGCCGCAAACUAAUGGCUGAUUAU ...........................................(((((((.....(((((((((..(((.(((.....))).))).....))))))))).........)))))))..... (-13.90 = -14.01 + 0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:35:53 2006