Locus 4874

Sequence ID 3L_DroMel_CAF1
Location 13,612,551 – 13,612,650
Length 99
Max. P 0.695581
window7694

overview

Window 4

Location 13,612,551 – 13,612,650
Length 99
Sequences 5
Columns 119
Reading direction forward
Mean pairwise identity 78.31
Mean single sequence MFE -33.20
Consensus MFE -19.23
Energy contribution -19.66
Covariance contribution 0.43
Combinations/Pair 1.08
Mean z-score -1.84
Structure conservation index 0.58
SVM decision value 0.34
SVM RNA-class probability 0.695581
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 13612551 99 + 23771897
UGGCCGAAACAAGAGAGACGCUUAAAAGAGCUUUAGC--GUUAACAGUGUUAGCGGGAUAGGCCAUUGCCAUUAAAUCGGUGGUCGGCAUUGGCACU------------------GGUC
...(((.((((.....((((((.(((.....))))))--))).....))))..)))..(((((((.((((((((......)))).)))).)))).))------------------)... ( -28.50)
>DroSec_CAF1 19598 99 + 1
UGGCCGAAACAAGAGUGACGCUUAAAAGAGCUUUAGC--GUUAACGGUGUUAGCAGGAAAGGCCAUUUCCAUUAAAUCGGUGGUCGGCAUCGGCAUU------------------GGCC
.((((((((((....(((((((.(((.....))))))--))))....)))).((.(((((.....))))).......(((((.....))))))).))------------------)))) ( -31.40)
>DroSim_CAF1 28678 99 + 1
UGGCCGAAACAAGAGUGACGCUUAAAAGAGCUUUAGC--GUUAACGGUGUUAGCAGGAAAGGCCAUUUCCAUUAAAUCGGUGGUCGGCAUCGGCAUU------------------GGCC
.((((((((((....(((((((.(((.....))))))--))))....)))).((.(((((.....))))).......(((((.....))))))).))------------------)))) ( -31.40)
>DroEre_CAF1 22357 92 + 1
UGGCCGAAAC---------------AAGAGCUUUUGCAUGCUAACGGUGUUAGCAGGAAAGGCCAUUUCCAUUAAAUUGGUGGUCGGCAUUGGCAUUGGCA------------UCGGCC
.((((((..(---------------((..(((..(((.(((((((...))))))).....(((((...(((......)))))))).)))..))).)))...------------)))))) ( -37.00)
>DroYak_CAF1 26616 117 + 1
CGGCCGAAACGAGAGUGACGAUUAAAAGAGCUUUGGC--GUUAACGGUGUUAGCAAUAAUGGCCAUUUCCAUUAAAUUGCUGGUCGGCAUUUGCAUCGGCAUCGACAUCGACAUCGGCC
.((((((((((.((((..(........).))))...)--)))..((((((((((((((((((......))))))..))))).((((((....))..))))...)))))))...)))))) ( -37.70)
>consensus
UGGCCGAAACAAGAGUGACGCUUAAAAGAGCUUUAGC__GUUAACGGUGUUAGCAGGAAAGGCCAUUUCCAUUAAAUCGGUGGUCGGCAUUGGCAUU__________________GGCC
.((((.......(((.....)))......(((...((..((((((...))))))......(((((((...........))))))).))...))).....................)))) (-19.23 = -19.66 +   0.43)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:35:50 2006