| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 13,609,625 – 13,609,758 |
| Length | 133 |
| Max. P | 0.990184 |
| Location | 13,609,625 – 13,609,721 |
|---|---|
| Length | 96 |
| Sequences | 5 |
| Columns | 96 |
| Reading direction | reverse |
| Mean pairwise identity | 99.38 |
| Mean single sequence MFE | -14.42 |
| Consensus MFE | -14.14 |
| Energy contribution | -14.54 |
| Covariance contribution | 0.40 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.40 |
| Structure conservation index | 0.98 |
| SVM decision value | 0.64 |
| SVM RNA-class probability | 0.809790 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 13609625 96 - 23771897 UCCUUGUCACACGUCAGUAAAUCAGAUGACGCUCCAGCCCUCUUCCACCUGGGGCACUUCCCGUCUCGCCUCAUCCAUCAUACUUAUAAAUAUUCA ............((.((((.....(((((.((....((((.(........)))))((.....))...)).))))).....)))).))......... ( -15.50) >DroSec_CAF1 16783 96 - 1 UCCUUGUCACACGUCAGUAAAUCAGAUGACGCUCCAGCCCUCUUCCACCUGGGGCACUUCCCGUCUCGCCUCAUCCAUCAUACUUAUAAAUAUUCA ............((.((((.....(((((.((....((((.(........)))))((.....))...)).))))).....)))).))......... ( -15.50) >DroSim_CAF1 25776 96 - 1 UCCUUGUCACACGUCAGUAAAUCAGAUGACGCUCCAGCCCUCUUCCACCUGGGGCACUUCCCGUCUCGCCUCAUCCAUCAUACUUAUAAAUAUUCA ............((.((((.....(((((.((....((((.(........)))))((.....))...)).))))).....)))).))......... ( -15.50) >DroEre_CAF1 19417 96 - 1 UCCUUGUCACACGUCAGUAAAUCAGAUGCCGCUCCAGCCCUCUUCCACCUGGGGCACUUCCCGUCUCGCCUCAUCCAUCAUACUUAUAAAUAUUCA ............((.((((.....((((..((....((((.(........)))))((.....))...))..)))).....)))).))......... ( -12.80) >DroYak_CAF1 23594 96 - 1 UCCUUGUCACACGUCAGUAAAUCAGAUGCCGCUCCAGCCCUCUUCCACCUGGGGCACUUCCCGUCUCGCCUCAUCCAUCAUACUUAUAAAUAUUCA ............((.((((.....((((..((....((((.(........)))))((.....))...))..)))).....)))).))......... ( -12.80) >consensus UCCUUGUCACACGUCAGUAAAUCAGAUGACGCUCCAGCCCUCUUCCACCUGGGGCACUUCCCGUCUCGCCUCAUCCAUCAUACUUAUAAAUAUUCA ............((.((((.....(((((.((....((((.(........)))))((.....))...)).))))).....)))).))......... (-14.14 = -14.54 + 0.40)
| Location | 13,609,665 – 13,609,758 |
|---|---|
| Length | 93 |
| Sequences | 5 |
| Columns | 93 |
| Reading direction | reverse |
| Mean pairwise identity | 98.92 |
| Mean single sequence MFE | -17.34 |
| Consensus MFE | -15.46 |
| Energy contribution | -15.30 |
| Covariance contribution | -0.16 |
| Combinations/Pair | 1.07 |
| Mean z-score | -2.35 |
| Structure conservation index | 0.89 |
| SVM decision value | 2.20 |
| SVM RNA-class probability | 0.990184 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 13609665 93 - 23771897 CUAACUACGCAUUAAUUUCCUUACCUUUAUCCCUGACUCCUUGUCACACGUCAGUAAAUCAGAUGACGCUCCAGCCCUCUUCCACCUGGGGCA .................................((((.....))))...((((..........))))(((((((...........))))))). ( -17.10) >DroSec_CAF1 16823 93 - 1 CUAACUACGCAUUAAUUUCCUUACCUUUAUCCCUGACUCCUUGUCACACGUCAGUAAAUCAGAUGACGCUCCAGCCCUCUUCCACCUGGGGCA .................................((((.....))))...((((..........))))(((((((...........))))))). ( -17.10) >DroSim_CAF1 25816 93 - 1 CUAACUACGCAUUAAUUUCCUUACCUUUAUCCCUGACUCCUUGUCACACGUCAGUAAAUCAGAUGACGCUCCAGCCCUCUUCCACCUGGGGCA .................................((((.....))))...((((..........))))(((((((...........))))))). ( -17.10) >DroEre_CAF1 19457 93 - 1 CUAACUACGCAUUAAUUUCCUUACCUUUAUCCCUGGCUCCUUGUCACACGUCAGUAAAUCAGAUGCCGCUCCAGCCCUCUUCCACCUGGGGCA ........(((((....................((((.....)))).((....))......))))).(((((((...........))))))). ( -17.40) >DroYak_CAF1 23634 93 - 1 CUAACUACGCAUUAAUUUCCUUACCUUUAUCCCUGACUCCUUGUCACACGUCAGUAAAUCAGAUGCCGCUCCAGCCCUCUUCCACCUGGGGCA ........(((((....................((((.....)))).((....))......))))).(((((((...........))))))). ( -18.00) >consensus CUAACUACGCAUUAAUUUCCUUACCUUUAUCCCUGACUCCUUGUCACACGUCAGUAAAUCAGAUGACGCUCCAGCCCUCUUCCACCUGGGGCA .................................((((.....))))..((((.........))))..(((((((...........))))))). (-15.46 = -15.30 + -0.16)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:35:46 2006