| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 13,608,907 – 13,609,026 |
| Length | 119 |
| Max. P | 0.960492 |
| Location | 13,608,907 – 13,609,026 |
|---|---|
| Length | 119 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 91.79 |
| Mean single sequence MFE | -31.73 |
| Consensus MFE | -27.75 |
| Energy contribution | -27.20 |
| Covariance contribution | -0.55 |
| Combinations/Pair | 1.14 |
| Mean z-score | -2.14 |
| Structure conservation index | 0.87 |
| SVM decision value | 1.51 |
| SVM RNA-class probability | 0.960492 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 13608907 119 - 23771897 GUCUCAAACAUUUUUAUGGCAGCACUCGCAAUUUGAUUAGCGCAAAUAAAGAGCGACAAAUUCAAUUGAAUUUGUAAUAUAGAUUGACUGCCAAUGAUGAUUGGCUUCAGCUGCGACCG- (((.....(((....)))(((((.....(((((((.....(((.........)))((((((((....))))))))....)))))))...((((((....))))))....))))))))..- ( -33.40) >DroSec_CAF1 16073 119 - 1 GUCUCAAACAUUUUUAUGGCAGCACUCGCAAUUUGAUUAGCGCAAAUAAAGAGCGACAAAUUCAAUUGAAUUUGUAAUAUAGAUUGACUGCCAAUGAUGAUUGGCUUCAGCUGCGACCG- (((.....(((....)))(((((.....(((((((.....(((.........)))((((((((....))))))))....)))))))...((((((....))))))....))))))))..- ( -33.40) >DroSim_CAF1 25068 119 - 1 GUCUCAAACAUUUUUAUGGCAGCACUCGCAAUUUCAUUAGCGCAAAUAAAGAGCGACAAAUUCAAUUGAAUUUGUAAUAUAGAUUGACUGCCAAUGAUGAUUGGCUUCAGCUGCGACCG- (((.....(((....)))(((((.....((((((......(((.........)))((((((((....)))))))).....))))))...((((((....))))))....))))))))..- ( -31.60) >DroEre_CAF1 18696 119 - 1 GUCUCAAACAUUUUUAUGGCAGCCCUCGCAAUUUGAUUAGCGCAAAUAAGGAGCGACAAAUUCAAUUGAAUUUGUAAUAUAGAUUGACUGCCAAUGAUGAUUGGCUUCAGCUGCGACCG- (((.....(((....)))(((((.....(((((((.....(((.........)))((((((((....))))))))....)))))))...((((((....))))))....))))))))..- ( -32.50) >DroYak_CAF1 22889 119 - 1 GUCUCAAACAUUUUUAUGGCAGCCCUCGCAAUUUGAUUAGCGCAAAUAAAGAGCGACAAAUUCAAUUGAAUUUGUAAUAUAGAUUGACUGCCAAUGAUGAUUGGCUUCAGCUGCGACCG- (((.....(((....)))(((((.....(((((((.....(((.........)))((((((((....))))))))....)))))))...((((((....))))))....))))))))..- ( -32.50) >DroAna_CAF1 52007 118 - 1 GCGUCA-ACAUUUUUAUGGCAGCUCUCACAAUUUCAUUAGCCCGAAUAAGGAGUGACAAAUUCAGGCGAAUUUGUAAUUCACA-GGACUGCCAAUGAUUAUUGGCUUCGGUUUCGGUUUC ((((((-.........)))).))..................(((((....((((.((((((((....)))))))).))))...-.((..((((((....)))))).))...))))).... ( -27.00) >consensus GUCUCAAACAUUUUUAUGGCAGCACUCGCAAUUUGAUUAGCGCAAAUAAAGAGCGACAAAUUCAAUUGAAUUUGUAAUAUAGAUUGACUGCCAAUGAUGAUUGGCUUCAGCUGCGACCG_ (((.....(((....)))(((((...(((..(((.(((......))))))..)))((((((((....)))))))).........(((..((((((....)))))).)))))))))))... (-27.75 = -27.20 + -0.55)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:35:45 2006