Locus 4869

Sequence ID 3L_DroMel_CAF1
Location 13,607,688 – 13,607,799
Length 111
Max. P 0.798216
window7687

overview

Window 7

Location 13,607,688 – 13,607,799
Length 111
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 93.04
Mean single sequence MFE -25.13
Consensus MFE -20.91
Energy contribution -21.35
Covariance contribution 0.44
Combinations/Pair 1.04
Mean z-score -2.14
Structure conservation index 0.83
SVM decision value 0.61
SVM RNA-class probability 0.798216
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 13607688 111 + 23771897
UUUUAUGCAAAUGUUUCAAGUGUCACGGACUAAAAUGGCAAUUGAAACGCUAAUGAUGACAUUUGGCAGGCCUAAGCAGUGGGCCAAGGA-AACAAAA--------UAACAAACUAAAAA
............(((((((.(((((..........))))).)))))))(((((((....)).))))).((((((.....))))))..(..-..)....--------.............. ( -26.90)
>DroSec_CAF1 14867 112 + 1
UUUUAUGCAAAUGUUUCAAGUGUCACGGACUAAAAUGGCAAUUGAAACGCUAAUGAUGACAUUUGGCAGGCCUAAGCAGUGGGCCAAGGAAAACAAAA--------UAACAAACUAAAAA
............(((((((.(((((..........))))).)))))))(((((((....)).))))).((((((.....)))))).............--------.............. ( -25.20)
>DroSim_CAF1 23842 112 + 1
UUUUAUGCAAAUGUUUCAAGUGUCACGGACUAAAAUGGCAAUUGAAACGCUAAUGAUGACAUUUGGCAGGCCUAAGCAGUGGGCCAAGGAAAACAAAA--------UAACAAACUAAAAA
............(((((((.(((((..........))))).)))))))(((((((....)).))))).((((((.....)))))).............--------.............. ( -25.20)
>DroEre_CAF1 17423 112 + 1
UUUUAUGCAAAUGUUUCGAGUGUCACGGACUAAAAUGGCAAUUGAAACGCUAAUGAUGACAUUUGGCAGGCCUAAGCAGCGGGCCAAGGAAAACAAAA--------UAACAAACUAAAAA
............(((((((.(((((..........))))).)))))))(((((((....)).))))).(((((.......))))).............--------.............. ( -23.60)
>DroYak_CAF1 21609 120 + 1
UUUUAUGCAAAUGUUUCAAGUGUCACGGACUAAAAUGGCAAUUGAAACGCUAAUGAUGACAUUUGGCAGGCCUAAGCAGCGGGCCAAGGAAAACAAAAUAACAAAAUAACAAACUAAAAA
............(((((((.(((((..........))))).)))))))(((((((....)).))))).(((((.......)))))................................... ( -23.90)
>DroAna_CAF1 50627 119 + 1
UUUUAUGCAAAUGCUCCGAGUGUCACGGCCUAAAACGGCAAUUGAAACGCUAAUGAUGACAUUUGGCAG-CCUAAGCGGCGGGCCAAGGAAAACAAAACAACAAAAUAACAAACUUAAAA
......((....))(((((((((((..(((......))).((((......))))..))))))))(((.(-((.....)))..)))..))).............................. ( -26.00)
>consensus
UUUUAUGCAAAUGUUUCAAGUGUCACGGACUAAAAUGGCAAUUGAAACGCUAAUGAUGACAUUUGGCAGGCCUAAGCAGCGGGCCAAGGAAAACAAAA________UAACAAACUAAAAA
............(((((((.(((((..........))))).)))))))(((((((....)).))))).(((((.......)))))................................... (-20.91 = -21.35 +   0.44)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:35:43 2006