Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 13,607,074 – 13,607,172 |
Length | 98 |
Max. P | 0.995159 |
Location | 13,607,074 – 13,607,172 |
---|---|
Length | 98 |
Sequences | 5 |
Columns | 103 |
Reading direction | forward |
Mean pairwise identity | 90.18 |
Mean single sequence MFE | -24.76 |
Consensus MFE | -22.94 |
Energy contribution | -23.14 |
Covariance contribution | 0.20 |
Combinations/Pair | 1.00 |
Mean z-score | -1.93 |
Structure conservation index | 0.93 |
SVM decision value | 2.55 |
SVM RNA-class probability | 0.995159 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 13607074 98 + 23771897 CCC-----UGCCCCCGCUUCACCGCAAUAUCAUCACACGAAAGUGUCGCGUUUGCGUGUCGCUUAUCAUUGGCCCUUGGCCAAAACAAAAAUGAAGACACCCC ...-----.......((((((.................(((((((.((((....)))).))))).)).((((((...))))))........))))).)..... ( -24.70) >DroSec_CAF1 14259 99 + 1 CCCA----UGCCCCCGCUUCUCCGCAAUAUCAUCACACGAAAGUGUCGCGUUUGCGUGUCGCUUAUCAUUGGCCCUUGGCCAAAACAAAAAUGAAGACACCCC ....----...............((((.......((((....)))).....))))(((((........((((((...))))))..((....))..)))))... ( -23.70) >DroSim_CAF1 23232 99 + 1 CCCA----UGCCCCCGCUUCUCUGCAAUAUCAUCACACGAAAGUGUCGCGUUUGCGUGUCGCUUAUCAUUGGCCCUUGGCCAAAACAAAAAUGAAGACACCCC ...(----(((....((......)).........((((....)))).))))....(((((........((((((...))))))..((....))..)))))... ( -24.20) >DroEre_CAF1 16861 103 + 1 CCCGCCUCCGUCUCCGCUGCGCCAUAAUAUCAUCACACGAAAGUGUCGCGUUUGCGUGUCGCUUAUCAUUGGCCUUUGGCCAAAACAAAAAUGAAGACACCCC .........((((.(((.((((............((((....)))).((....)))))).))......((((((...)))))).........).))))..... ( -26.20) >DroYak_CAF1 21064 98 + 1 GCCGCCAC-----CCGCUUCAACACAAUAUCAUCACACGAAAGUGUCGCGUUUGCGUGUCGCUUAUCAUUGGCCCUUGGCCAAAACAAAAAUGAAGACACCCC ........-----..((((((.................(((((((.((((....)))).))))).)).((((((...))))))........))))).)..... ( -25.00) >consensus CCCA____UGCCCCCGCUUCACCGCAAUAUCAUCACACGAAAGUGUCGCGUUUGCGUGUCGCUUAUCAUUGGCCCUUGGCCAAAACAAAAAUGAAGACACCCC ...............(((((..................(((((((.((((....)))).))))).)).((((((...)))))).........)))).)..... (-22.94 = -23.14 + 0.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:35:42 2006