Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 13,605,773 – 13,605,864 |
Length | 91 |
Max. P | 0.981502 |
Location | 13,605,773 – 13,605,864 |
---|---|
Length | 91 |
Sequences | 5 |
Columns | 91 |
Reading direction | forward |
Mean pairwise identity | 96.24 |
Mean single sequence MFE | -17.80 |
Consensus MFE | -15.24 |
Energy contribution | -15.24 |
Covariance contribution | 0.00 |
Combinations/Pair | 1.00 |
Mean z-score | -2.07 |
Structure conservation index | 0.86 |
SVM decision value | 1.89 |
SVM RNA-class probability | 0.981502 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 13605773 91 + 23771897 CCCUAACAACAUUUCAUAUUAAGGCAGCAGCUAUAAAAAUUAACGAGCUGCAAGUAAUGUAAUGUAGCAUACUUUCUGCCAUCAAAUGCGC ......................((((((((((.............))))))(((((.(((......))))))))..))))........... ( -18.72) >DroSec_CAF1 12665 91 + 1 UCCUAACAACAUUUCAUAUUAAGGCAGCAGCUAUAAAAAUUAACGAGCUGCAAGUAAUGUAAUGUAGCAUACUUUCUGCCAUCAAAUGCGC ......................((((((((((.............))))))(((((.(((......))))))))..))))........... ( -18.72) >DroSim_CAF1 21945 91 + 1 UCCUAACAACAUUUCAUAUUAAGGCAGCAGCUAUAAAAAUUAACGAGCUGCAAGUAAUGUAAUGUAGCAUACUUUCUGCCAUCAAAUGCGC ......................((((((((((.............))))))(((((.(((......))))))))..))))........... ( -18.72) >DroEre_CAF1 15572 86 + 1 UCCUAACAACAUUUCAUAUUAAGGCAGCAGCUAUAAAAAUUAACGAGCUGCAAGUAA-----UGUAGCAUACUUUCUGCCAUCAAAUGCGC ......................((((((((((.............))))))(((((.-----.......)))))..))))........... ( -16.42) >DroYak_CAF1 19740 86 + 1 UCCUAACAACAUUUCAUAUUAAGGCAGCAGCUAUAAAAAUUAACGAGCUGCAAGUAA-----UGUAGCAUACUUUCUGCCAUCAAAUGCGC ......................((((((((((.............))))))(((((.-----.......)))))..))))........... ( -16.42) >consensus UCCUAACAACAUUUCAUAUUAAGGCAGCAGCUAUAAAAAUUAACGAGCUGCAAGUAAUGUAAUGUAGCAUACUUUCUGCCAUCAAAUGCGC ......................((((((((((.............))))))(((((.............)))))..))))........... (-15.24 = -15.24 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:35:37 2006