| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 13,597,501 – 13,597,593 |
| Length | 92 |
| Max. P | 0.886595 |
| Location | 13,597,501 – 13,597,593 |
|---|---|
| Length | 92 |
| Sequences | 5 |
| Columns | 95 |
| Reading direction | forward |
| Mean pairwise identity | 93.49 |
| Mean single sequence MFE | -27.71 |
| Consensus MFE | -22.40 |
| Energy contribution | -23.12 |
| Covariance contribution | 0.72 |
| Combinations/Pair | 1.04 |
| Mean z-score | -1.82 |
| Structure conservation index | 0.81 |
| SVM decision value | 0.94 |
| SVM RNA-class probability | 0.886595 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 13597501 92 + 23771897 GCCGUGAAAAUGAAAAAUUGAUUUUGGCGGCAAGUGGCUGCAAGUGGCAGAUACUUAGACCCACUUUACAUGCA--GUAUACCC-AGCACGACGA (((((.(((((.(.....).))))).)))))..((((((((((((((.............))))).....))))--))......-..)))..... ( -24.42) >DroSec_CAF1 4340 93 + 1 GCCGUGAAAAUGAAAAAUUGAUUUUGGCGGCAAGUGGCUGCAAGUGGCAGAUACUUAGACCCACUUUACAUGCA--GUGUACGCAAGCACGACGA (((((.(((((.(.....).))))).)))))..((((((((((((((.............))))).....))))--))...(....))))..... ( -27.62) >DroSim_CAF1 13718 93 + 1 GCCGUGAAAAUGAAAAAUUGAUUUUGGCGGCAAGUGGCUGCAAGUGGCAGAUACUCAGACCCACUUUACAUGCA--GUGAACGCAAGCACGACGA (((((.(((((.(.....).))))).)))))..((((((((((((((.............))))).....))))--))...(....))))..... ( -27.62) >DroEre_CAF1 5545 92 + 1 GCCGUGAAAAUGAAAAAUUGAUUUUGGCGGCAAGUGGCUGCAAGUGGCAGAUACUCAGACCCACUUUACAUGCA--GUGCAG-CAAGCACGGCGA (((((.(((((.(.....).))))).)))))(((((((((..((((.....)))))))..))))))....(((.--((((..-...)))).))). ( -30.40) >DroYak_CAF1 10488 94 + 1 GCCGUGAAAAUGAAAAAUUGAUUUUGGCGGCAAGUGGCUGCGAGUGGCAGAUACUCAGACCCACUUUACAUGCAGAGUGUAC-CAGCAACGACGA (((((.(((((.(.....).))))).)))))..((.(.((((((((.....))))).....((((((......))))))...-..))).).)).. ( -28.50) >consensus GCCGUGAAAAUGAAAAAUUGAUUUUGGCGGCAAGUGGCUGCAAGUGGCAGAUACUCAGACCCACUUUACAUGCA__GUGUAC_CAAGCACGACGA (((((.(((((.(.....).))))).)))))((((((((((.....))))..........))))))..........((((......))))..... (-22.40 = -23.12 + 0.72)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:35:20 2006