| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 13,596,092 – 13,596,210 |
| Length | 118 |
| Max. P | 0.969208 |
| Location | 13,596,092 – 13,596,210 |
|---|---|
| Length | 118 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 78.78 |
| Mean single sequence MFE | -25.07 |
| Consensus MFE | -18.27 |
| Energy contribution | -18.63 |
| Covariance contribution | 0.36 |
| Combinations/Pair | 1.07 |
| Mean z-score | -2.51 |
| Structure conservation index | 0.73 |
| SVM decision value | 1.64 |
| SVM RNA-class probability | 0.969208 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 13596092 118 + 23771897 CGCCCACAUUAAAUUAAAAUUAAAAUGCUAAAAUUUCCCAGCUCAAGCUGUGGGCGUGGGUGAACACGCCCCUU--AGCCACAGCCGCCCCCCCCCCCCCCCCUUAGCUCCACCCUCCGC ..........................(((((.......((((....)))).(((((.(((((....)))))...--.((....))))))).............)))))............ ( -25.40) >DroSec_CAF1 2937 105 + 1 CGCCCACAUUAAAUUAAAAUUAAAAUGCUAAAAUUUCCCAGCUCAAGCUGUGGGCGUGGGUGAACACGCCCCUU--ACCCACAACC-------------CCCCUUAACUCCUCCCUCCGC .((((((...............((((......))))...(((....)))))))))((((((((.........))--))))))....-------------..................... ( -25.80) >DroSim_CAF1 12311 104 + 1 CGCCCACAUUAAAUUAAAAUUAAAAUGCUAAAAUUUCCCAGCUCAAGCUGUGGGCGUGGAUGAACACGCCCCUU--AGCCACAGCC-------------CCC-UUACACCCGUCCUCCGC ..........................(((((.......((((....)))).(((((((......))))))).))--))).......-------------...-................. ( -23.40) >DroEre_CAF1 4168 89 + 1 CGCCCACAUUAAAUUAAAAUUAAAAUGCUAAAAUUUGCCAGCUCAAGCUGUGGGCGUGGGCACACACGCCCCUU--AGC-----------------------------UCCGCCCGCCGC .((((((...................((........)).(((....)))))))))((((((......((.....--.))-----------------------------...))))))... ( -26.20) >DroYak_CAF1 9035 104 + 1 CGCCCACAUUAAAUUAAAAUUAAAAUGCUAAAAUUUCCCUGCUCAAGCUGUGGGCGUGGGCAUACACGCCCCUU--AGCCACAGCC-------------CCC-CUGGCCCCUCCCUCCGC ((((((((..............((((......))))....((....)))))))))).((((......))))...--.((((.....-------------...-.))))............ ( -25.00) >DroAna_CAF1 38965 100 + 1 CGCCCACAUUAAAUAAAAAUUAAAAUGCUAAA-UUUUGCAGCUCGAGCUGGGGGCGUCUGC-CACACGCCCCUGCUGGCCG----C-------------CCA-CUGCUCCCCUCCUCCUC .........................(((....-....)))....((((...(((((...((-((((......)).))))))----)-------------)).-..))))........... ( -24.60) >consensus CGCCCACAUUAAAUUAAAAUUAAAAUGCUAAAAUUUCCCAGCUCAAGCUGUGGGCGUGGGCGAACACGCCCCUU__AGCCACAGCC_____________CCC_UUACCCCCGCCCUCCGC ..........................(((.........((((....)))).(((((((......))))))).....)))......................................... (-18.27 = -18.63 + 0.36)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:35:14 2006