Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 13,593,096 – 13,593,201 |
Length | 105 |
Max. P | 0.786814 |
Location | 13,593,096 – 13,593,201 |
---|---|
Length | 105 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 86.13 |
Mean single sequence MFE | -26.86 |
Consensus MFE | -21.12 |
Energy contribution | -20.96 |
Covariance contribution | -0.16 |
Combinations/Pair | 1.17 |
Mean z-score | -1.80 |
Structure conservation index | 0.79 |
SVM decision value | 0.57 |
SVM RNA-class probability | 0.786814 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 13593096 105 + 23771897 --------------CGGC-AAAAACUCCAAAUGAAAAUAAACCGCAACAUUUUUCAUUUGUAUAGAAAAUGAAGAAGCGGACUCGGGAGCACUGGAGCUGAGGGACAAUAGGAGGAGGAC --------------....-.....((((.............((((....((((((((((.......)))))))))))))).(((...(((......)))..)))......))))...... ( -25.00) >DroSim_CAF1 9320 105 + 1 --------------CGGC-AAAAACUCCAAAUGAAAAUAAACCGCAACAUUUUUCAUUUGUAUAGAAAAUGAAGAAGCGGACUCGGGAGCACUGGAGCUGAGGGACAAUAGGAGGAGGAC --------------....-.....((((.............((((....((((((((((.......)))))))))))))).(((...(((......)))..)))......))))...... ( -25.00) >DroEre_CAF1 967 105 + 1 --------------CGGC-AAAAACUCCAAAUGAAAAUAAACCGCAACAUUUUUCAUUUGUAUAGAAAAUGAAGAAGCGGACUCCGGAGCACUGGAGCUGAGGGACAAUAGGAGGAGGAC --------------....-.....((((.............((((....((((((((((.......)))))))))))))).((((((....)))))).............))))...... ( -27.80) >DroYak_CAF1 5901 105 + 1 --------------CGGC-AAAAACUCCAAAUGAAAAUAAACCGCAACAUUUUUCAUUUGUAUAGAAAAUGAAGAAGCGGACUCGGGAGCACUGGAGCUGAGGGACAAUAGGAGGAGGAC --------------....-.....((((.............((((....((((((((((.......)))))))))))))).(((...(((......)))..)))......))))...... ( -25.00) >DroAna_CAF1 36116 117 + 1 CAGAGGCCAGAGGACGGCGGAAAACUCCAAAUGAAAAUAAACCGCAACAUUUUUCAUUUGUAUAGAAAAUGAAGAAGCCAUCGCCGAGGUCGUGGGAUCGAGGGG---UCGAAGGGCGAC .....(((....(((((((((....))).....................((((((((((.......)))))))))))))....((..((((....))))..)).)---))....)))... ( -31.50) >consensus ______________CGGC_AAAAACUCCAAAUGAAAAUAAACCGCAACAUUUUUCAUUUGUAUAGAAAAUGAAGAAGCGGACUCGGGAGCACUGGAGCUGAGGGACAAUAGGAGGAGGAC ........................((((.............((((....((((((((((.......)))))))))))))).(((...(((......)))..))).........))))... (-21.12 = -20.96 + -0.16)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:35:10 2006