Locus 4851

Sequence ID 3L_DroMel_CAF1
Location 13,591,544 – 13,591,648
Length 104
Max. P 0.829415
window7652

overview

Window 2

Location 13,591,544 – 13,591,648
Length 104
Sequences 4
Columns 120
Reading direction reverse
Mean pairwise identity 75.64
Mean single sequence MFE -28.42
Consensus MFE -18.21
Energy contribution -18.27
Covariance contribution 0.06
Combinations/Pair 1.05
Mean z-score -1.80
Structure conservation index 0.64
SVM decision value 0.71
SVM RNA-class probability 0.829415
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 13591544 104 - 23771897
CC-------------CCGCCCACUGGCUAACACUGGCAAUAUAGGACAUAAUUAUAAGAAUUGCGGCCAGGGUCUCAAUUGUAAUUAUAAGUGGGAAACUAAGCCAACCAGGGGA---GC
((-------------(((((....)))......((((..........(((((((((...((((.(((....))).)))))))))))))...(((....))).))))....)))).---.. ( -32.30)
>DroSim_CAF1 7470 105 - 1
CC-------------CCGCCCACUGGCUAA--CUGGCAAUAUAGGACAUAAUUAUAAUCAUUGCGGCCAGGGUCUCAAUUGUAAUUAUAAGUGGGAAACUAAGCCAACCAGGGGGUCCGC
((-------------(((((....)))...--.((((..........(((((((((((...((.(((....))).)))))))))))))...(((....))).))))....))))...... ( -32.50)
>DroYak_CAF1 4360 114 - 1
ACUGGCAGCGGGCCACCAACAACUGGC-AA--CUGGCAGUAUAGGACAUAAUUAUAAUCAUUGCGGCCACGGUCUCAAUUGUAAUUAUAAGUGGGAAACUAAGCCAACCGGAGGG---GG
((((.(((...((((........))))-..--))).))))...((.((((((((((((...((.(((....))).)))))))))))))...(((....))).)))..((....))---.. ( -32.40)
>DroAna_CAF1 34629 81 - 1
----------------------CUGAC-AA--CCGACAAUAUAGGACAUAAUUAUAAUCAUUGCGGCCGCGGUCUCAAUUGUAAUUAUAAGUAGGAAACUAAGCCA--------------
----------------------.....-..--...........((.((((((((((((...((.(((....))).)))))))))))))...(((....))).))).-------------- ( -16.50)
>consensus
CC_____________CCGCCCACUGGC_AA__CUGGCAAUAUAGGACAUAAUUAUAAUCAUUGCGGCCACGGUCUCAAUUGUAAUUAUAAGUGGGAAACUAAGCCAACCAGGGGG___GC
..................................(((..........(((((((((...((((.(((....))).)))))))))))))...(((....))).)))............... (-18.21 = -18.27 +   0.06)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:35:09 2006