| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 13,590,379 – 13,590,472 |
| Length | 93 |
| Max. P | 0.893932 |
| Location | 13,590,379 – 13,590,472 |
|---|---|
| Length | 93 |
| Sequences | 3 |
| Columns | 93 |
| Reading direction | forward |
| Mean pairwise identity | 78.14 |
| Mean single sequence MFE | -16.13 |
| Consensus MFE | -13.27 |
| Energy contribution | -12.83 |
| Covariance contribution | -0.43 |
| Combinations/Pair | 1.25 |
| Mean z-score | -1.52 |
| Structure conservation index | 0.82 |
| SVM decision value | 0.98 |
| SVM RNA-class probability | 0.893932 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 13590379 93 + 23771897 AAUUGUGUUCGCCAUAAAGUUGAAAGACUCAACUCCUCCAGACAAAUCAAUUCGUGAGUGAAUAUACCAACUAUAUAGCCACACUUACCAUUU ...((((((((((((..((((((.....))))))......((....)).....))).)))))))))........................... ( -14.40) >DroSim_CAF1 6181 81 + 1 AAUUGUAUUCACCACAAAGUUUAAGGACUGAACUCCUCUAGAAAAAUCAAUUCGUGAGUGAAUAUAC------------CACACUUGCCGCUU ...((((((((((((........((((......))))...(((.......)))))).))))))))).------------.............. ( -15.90) >DroYak_CAF1 3189 92 + 1 AAGUGUGUUCGCCAUAAAGUUAAAGGACUAAACUCCUCCAGACAAAUCAAUUCGUGAGUGAAUAC-CAAACUAUUUCGCCACACUUGGUGCUU ..(.((((((((......(((..((((......))))...)))...(((.....)))))))))))-).........(((((....)))))... ( -18.10) >consensus AAUUGUGUUCGCCAUAAAGUUAAAGGACUAAACUCCUCCAGACAAAUCAAUUCGUGAGUGAAUAUAC_AACUAU_U_GCCACACUUGCCGCUU ...((((((((((((..((((((.....))))))......((....)).....))).)))))))))........................... (-13.27 = -12.83 + -0.43)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:35:08 2006