Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 1,364,029 – 1,364,178 |
Length | 149 |
Max. P | 0.807330 |
Location | 1,364,029 – 1,364,143 |
---|---|
Length | 114 |
Sequences | 6 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 87.87 |
Mean single sequence MFE | -34.18 |
Consensus MFE | -30.66 |
Energy contribution | -30.33 |
Covariance contribution | -0.33 |
Combinations/Pair | 1.21 |
Mean z-score | -1.61 |
Structure conservation index | 0.90 |
SVM decision value | 0.64 |
SVM RNA-class probability | 0.807330 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 1364029 114 - 23771897 UGUAGCCA---UAUUUCCCAUACCGGGAAUUGAACCCGGGCCUUCCGGGUGAGAGCCGGAUAUCCUAACCACUAGACAAUAUGGGACUUGGGAU---GCAGUAUCAAAAACAUUUUUAAG ((((.((.---((..(((((((((((...((..((((((.....))))))..)).)))).....(((.....)))....)))))))..)))).)---))).................... ( -33.90) >DroSec_CAF1 19676 114 - 1 UGUAGCCA---UAUUUCCCAUACCGGGAAUUGAACCCGGGCCUUCCGGGUGAGAGCCGGAUAUCCUAACCACUAGACAAUAUGGGACUUGGGAU---GCAGAAUCAAAAACAGUUUCAAG ((((.((.---((..(((((((((((...((..((((((.....))))))..)).)))).....(((.....)))....)))))))..)))).)---))).................... ( -33.90) >DroSim_CAF1 17008 114 - 1 UGUAGCCA---UAUUUCCCAUACCGGGAAUUGAACCCGGGCCUUCCGGGUGAGAGCCGGAUAUCCUAACCACUAGACAAUAUGGGACUUGGGAU---GCAGAAUCAAAAACAGUUUCAAG ((((.((.---((..(((((((((((...((..((((((.....))))))..)).)))).....(((.....)))....)))))))..)))).)---))).................... ( -33.90) >DroEre_CAF1 20363 114 - 1 GACAGCCA---UAUUUCCCAUACCGGGAAUUGAACCCGGGCCUUCCGGGUGAGAGCCGGAUAUCCUAACCACUAGACAAUAUGGGACUUGGAAU---GCAACAUCGAAAACAUGUCCUAG ((((.(((---....(((((((((((...((..((((((.....))))))..)).)))).....(((.....)))....)))))))..)))...---...............)))).... ( -32.41) >DroYak_CAF1 21068 114 - 1 UACAGCCA---UAUUUCCCAUACCGGGAAUUGAACCCGGGCCUUCCGGGUGAGAGCCGGAUAUCCUAACCACUAGACAAUAUGGGACUUGGGAU---GCAAUUUCGAGAACACGUCCAAG ........---....(((((((((((...((..((((((.....))))))..)).)))).....(((.....)))....)))))))((((..((---...))..))))............ ( -32.90) >DroAna_CAF1 20655 120 - 1 UCUAGCAAAAAAGUUUCCCAUACCGGGAAUCGAACCCGGGCCUUCCGGGUGAGAGCCGGAUAUCCUAACCACUAGACAAUAUGGGACUUGUGAUCAUGUCGCAUCCAUUUAGAUCACAAA ...............(((((((((((...((..((((((.....))))))..)).)))).....(((.....)))....))))))).(((((((((((.......)))...)))))))). ( -38.10) >consensus UGUAGCCA___UAUUUCCCAUACCGGGAAUUGAACCCGGGCCUUCCGGGUGAGAGCCGGAUAUCCUAACCACUAGACAAUAUGGGACUUGGGAU___GCAGAAUCAAAAACAGUUUCAAG ...............(((((((((((...((..((((((.....))))))..)).)))).....(((.....)))....)))))))(((((((....................))))))) (-30.66 = -30.33 + -0.33)
Location | 1,364,066 – 1,364,178 |
---|---|
Length | 112 |
Sequences | 6 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 82.82 |
Mean single sequence MFE | -26.98 |
Consensus MFE | -20.09 |
Energy contribution | -19.95 |
Covariance contribution | -0.14 |
Combinations/Pair | 1.06 |
Mean z-score | -1.35 |
Structure conservation index | 0.74 |
SVM decision value | -0.08 |
SVM RNA-class probability | 0.500000 |
Prediction | OTHER |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 1364066 112 - 23771897 UUUUCAAAAUAU---GUAAUUGUGUAUGGAA--AAAUACUUGUAGCCA---UAUUUCCCAUACCGGGAAUUGAACCCGGGCCUUCCGGGUGAGAGCCGGAUAUCCUAACCACUAGACAAU ............---...(((((.(((((..--...........((..---...(((((.....)))))((..((((((.....))))))..)))).((....))...))).)).))))) ( -27.00) >DroSec_CAF1 19713 114 - 1 UUUUCAAAAUGU---GCAAUGGUGUAUGGAAAAAAAUAUUUGUAGCCA---UAUUUCCCAUACCGGGAAUUGAACCCGGGCCUUCCGGGUGAGAGCCGGAUAUCCUAACCACUAGACAAU ..........((---(..((((.((((((..(((....)))....)))---)))...)))).((((...((..((((((.....))))))..)).))))..........)))........ ( -29.10) >DroSim_CAF1 17045 114 - 1 UUUUCAAAAUGU---GCAAUGGUGUAUGAAAAAAAAUAUUUGUAGCCA---UAUUUCCCAUACCGGGAAUUGAACCCGGGCCUUCCGGGUGAGAGCCGGAUAUCCUAACCACUAGACAAU .........(((---((.(((((.((..((........))..))))))---)..(((((.....)))))((..((((((.....))))))..)))).((....))..........))).. ( -26.40) >DroEre_CAF1 20400 100 - 1 UUUUCAAAAU-----------------AAAAAAAAAACUUGACAGCCA---UAUUUCCCAUACCGGGAAUUGAACCCGGGCCUUCCGGGUGAGAGCCGGAUAUCCUAACCACUAGACAAU (((((.....-----------------...................((---...(((((.....))))).)).((((((.....)))))))))))..((....))............... ( -20.50) >DroYak_CAF1 21105 110 - 1 UAUUCAAAAUGU---GU----GUACAUGUAAAAAAAACUUUACAGCCA---UAUUUCCCAUACCGGGAAUUGAACCCGGGCCUUCCGGGUGAGAGCCGGAUAUCCUAACCACUAGACAAU ......((((((---(.----((...((((((......))))))))))---)))))......((((...((..((((((.....))))))..)).))))..................... ( -26.60) >DroAna_CAF1 20695 119 - 1 CUCGCAACAUAGCGAUUAAUUAAAGCUGGAA-CUAAUAACUCUAGCAAAAAAGUUUCCCAUACCGGGAAUCGAACCCGGGCCUUCCGGGUGAGAGCCGGAUAUCCUAACCACUAGACAAU .((((......)))).........((((((.-........))))))................((((...((..((((((.....))))))..)).))))..................... ( -32.30) >consensus UUUUCAAAAUGU___GUAAU_GUGUAUGGAAAAAAAUAUUUGUAGCCA___UAUUUCCCAUACCGGGAAUUGAACCCGGGCCUUCCGGGUGAGAGCCGGAUAUCCUAACCACUAGACAAU ............................................((........(((((.....)))))((..((((((.....))))))..)))).((....))............... (-20.09 = -19.95 + -0.14)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:43:10 2006