| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 13,590,118 – 13,590,212 |
| Length | 94 |
| Max. P | 0.766113 |
| Location | 13,590,118 – 13,590,212 |
|---|---|
| Length | 94 |
| Sequences | 3 |
| Columns | 94 |
| Reading direction | reverse |
| Mean pairwise identity | 95.00 |
| Mean single sequence MFE | -14.77 |
| Consensus MFE | -14.30 |
| Energy contribution | -14.30 |
| Covariance contribution | -0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.71 |
| Structure conservation index | 0.97 |
| SVM decision value | 0.52 |
| SVM RNA-class probability | 0.766113 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 13590118 94 - 23771897 AUCUUCACUCUGCAACCCAAGAAUUUCUUCUUCUCUAUGUUAACUAUUUUUUUUUUUUUCGUAUUGUGUUUGAGAUGCUUUUCAAAUAGGGUUA .............((((((((((....)))))..................................(((((((((....)))))))))))))). ( -15.00) >DroSim_CAF1 5927 92 - 1 AUCUUCACUCUGCAACCCAAGAAUUUCAUCUUCUCUAUGUUAACUAUAUUU--UUUUUUCGUAUUGUGUUUGAGAUGCUUUUCAAAUAGGGUUA .............(((((((((......))))...................--.............(((((((((....)))))))))))))). ( -14.30) >DroYak_CAF1 2938 89 - 1 AUCUUCACUCUGCAACCCAAGAAUUUCUUCUUCUCUAUGUUAACUAUU-----UUUUUUCGUAUUGUGUUUGAGAUGCUUUUCAAAUAGGGUUA .............((((((((((....)))))................-----.............(((((((((....)))))))))))))). ( -15.00) >consensus AUCUUCACUCUGCAACCCAAGAAUUUCUUCUUCUCUAUGUUAACUAUUUUU__UUUUUUCGUAUUGUGUUUGAGAUGCUUUUCAAAUAGGGUUA .............(((((((((......))))..................................(((((((((....)))))))))))))). (-14.30 = -14.30 + -0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:35:07 2006