| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 13,589,767 – 13,589,861 |
| Length | 94 |
| Max. P | 0.541982 |
| Location | 13,589,767 – 13,589,861 |
|---|---|
| Length | 94 |
| Sequences | 3 |
| Columns | 94 |
| Reading direction | forward |
| Mean pairwise identity | 83.51 |
| Mean single sequence MFE | -11.15 |
| Consensus MFE | -8.10 |
| Energy contribution | -7.77 |
| Covariance contribution | -0.33 |
| Combinations/Pair | 1.21 |
| Mean z-score | -1.69 |
| Structure conservation index | 0.73 |
| SVM decision value | 0.02 |
| SVM RNA-class probability | 0.541982 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 13589767 94 + 23771897 UAAUUAACACUCUGCACCACACACACACUCUCUAAUGCAUACACACACAUACACUUAGCCCUCCGUGUGUAAAAAGGGCGCACAAAAAUAUGCA .............((.((.......((........))..(((((((..................)))))))....))))(((........))). ( -11.77) >DroSim_CAF1 5578 91 + 1 UAAUUAACACUCAGCACCGCAC--ACACUCUCUAACACACACACACACAUACAA-AAGCCCUCAUUGUGUGAAAAGGGCGCACAAAAAUAUGCA .............((.((.(((--(((...........................-..........))))))....))))(((........))). ( -11.99) >DroYak_CAF1 2582 85 + 1 UAAUUAACACUCAGCAACACAC--ACACUCUCAAUAACACACACACAC-------UAGCACUCAUUGUGUGAAAAGGGCGCACAAAAAUAUGCA ......................--........................-------..(((....(((((((.......))))))).....))). ( -9.70) >consensus UAAUUAACACUCAGCACCACAC__ACACUCUCUAAAACACACACACACAUACA__UAGCCCUCAUUGUGUGAAAAGGGCGCACAAAAAUAUGCA .............(((.........(.((((....((((((........................))))))...)))).)..........))). ( -8.10 = -7.77 + -0.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:35:06 2006