Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 13,578,949 – 13,579,052 |
Length | 103 |
Max. P | 0.930535 |
Location | 13,578,949 – 13,579,052 |
---|---|
Length | 103 |
Sequences | 4 |
Columns | 114 |
Reading direction | forward |
Mean pairwise identity | 91.12 |
Mean single sequence MFE | -18.40 |
Consensus MFE | -13.31 |
Energy contribution | -13.43 |
Covariance contribution | 0.12 |
Combinations/Pair | 1.05 |
Mean z-score | -1.77 |
Structure conservation index | 0.72 |
SVM decision value | -0.02 |
SVM RNA-class probability | 0.522047 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 13578949 103 + 23771897 UUGCUUAUCUUCCCAACCCAGAUCCUGCAUCCUUAAUCCACCAUCCACUUUCCAGU-----UCCCAGCUGCAUCUUUCCGGGUUUU------CCCCGUCCUCCAGGGCAAAGUA .(((..((((.........))))...))).................(((((.((((-----.....)))).........(((....------.)))((((....))))))))). ( -16.10) >DroSec_CAF1 60366 103 + 1 UUGCUUAUCUUCCCAACCCAGAUCCUGCAUCCUUAAUCCACCAUCCACUUUCCAGU-----UCCCAGCUGCAUCUUUCCGGGCUUU------CCCCGCCCUCCAGGGCAAAGUA .(((..((((.........))))...))).................(((((.((((-----.....)))).........(((....------.)))((((....))))))))). ( -18.50) >DroEre_CAF1 61889 109 + 1 UUGCUUAUCUUCCCAACCCAGAUCCUGCAUCCUUAAUCCACCAACCACUUUCCAGUGGAAAACCCAGCUGCAUCUUUCCGGGUUUUU-----GCCCGUCCUCCAGGGUAAAGUA .(((((........(((((.((...((((.......(((((.............))))).........))))....)).)))))..(-----((((........)))))))))) ( -23.91) >DroYak_CAF1 63328 109 + 1 UUGCUUAUCUUCCCAGCCCAGAUCCUGCAUCCUUAAUCCACCAACCACUUUCCAGU-----ACCCAGCUGCAUCUUUCCGGGUUUUUUUUUCCCCCGUCCUCCAGGGUAAAGUA .(((..((((.........))))...)))..(((.((((.............((((-----.....))))........((((...........)))).......)))).))).. ( -15.10) >consensus UUGCUUAUCUUCCCAACCCAGAUCCUGCAUCCUUAAUCCACCAACCACUUUCCAGU_____ACCCAGCUGCAUCUUUCCGGGUUUU______CCCCGUCCUCCAGGGCAAAGUA .(((((........(((((.((...((((.......................................))))....)).))))).........(((........)))..))))) (-13.31 = -13.43 + 0.12)
Location | 13,578,949 – 13,579,052 |
---|---|
Length | 103 |
Sequences | 4 |
Columns | 114 |
Reading direction | reverse |
Mean pairwise identity | 91.12 |
Mean single sequence MFE | -31.70 |
Consensus MFE | -24.67 |
Energy contribution | -25.05 |
Covariance contribution | 0.38 |
Combinations/Pair | 1.04 |
Mean z-score | -2.78 |
Structure conservation index | 0.78 |
SVM decision value | 1.21 |
SVM RNA-class probability | 0.930535 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 13578949 103 - 23771897 UACUUUGCCCUGGAGGACGGGG------AAAACCCGGAAAGAUGCAGCUGGGA-----ACUGGAAAGUGGAUGGUGGAUUAAGGAUGCAGGAUCUGGGUUGGGAAGAUAAGCAA ..((((.(((((.....)))))------..((((((((....((((((((...-----(((....)))...))))..........))))...))))))))..))))........ ( -29.60) >DroSec_CAF1 60366 103 - 1 UACUUUGCCCUGGAGGGCGGGG------AAAGCCCGGAAAGAUGCAGCUGGGA-----ACUGGAAAGUGGAUGGUGGAUUAAGGAUGCAGGAUCUGGGUUGGGAAGAUAAGCAA ..((((((((....))))))))------..((((((((....((((((((...-----(((....)))...))))..........))))...)))))))).............. ( -31.70) >DroEre_CAF1 61889 109 - 1 UACUUUACCCUGGAGGACGGGC-----AAAAACCCGGAAAGAUGCAGCUGGGUUUUCCACUGGAAAGUGGUUGGUGGAUUAAGGAUGCAGGAUCUGGGUUGGGAAGAUAAGCAA ..((((..((((.....)))).-----...((((((((....((((.((..((((.(((((....))))).....))))..))..))))...))))))))..))))........ ( -33.60) >DroYak_CAF1 63328 109 - 1 UACUUUACCCUGGAGGACGGGGGAAAAAAAAACCCGGAAAGAUGCAGCUGGGU-----ACUGGAAAGUGGUUGGUGGAUUAAGGAUGCAGGAUCUGGGCUGGGAAGAUAAGCAA .......(((((.....)))))..........(((((..((((.(.((..(.(-----(((....)))).)..))(.(((...))).).).))))...)))))........... ( -31.90) >consensus UACUUUACCCUGGAGGACGGGG______AAAACCCGGAAAGAUGCAGCUGGGA_____ACUGGAAAGUGGAUGGUGGAUUAAGGAUGCAGGAUCUGGGUUGGGAAGAUAAGCAA ..((((.(((((.....)))))........((((((((....((((.((.........(((....))).............))..))))...))))))))..))))........ (-24.67 = -25.05 + 0.38)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:34:59 2006