Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 13,578,241 – 13,578,334 |
Length | 93 |
Max. P | 0.500000 |
Location | 13,578,241 – 13,578,334 |
---|---|
Length | 93 |
Sequences | 6 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 77.50 |
Mean single sequence MFE | -26.25 |
Consensus MFE | -15.56 |
Energy contribution | -15.48 |
Covariance contribution | -0.08 |
Combinations/Pair | 1.25 |
Mean z-score | -1.41 |
Structure conservation index | 0.59 |
SVM decision value | -0.07 |
SVM RNA-class probability | 0.500000 |
Prediction | OTHER |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 13578241 93 + 23771897 -GAC--AAGGU-----AAA-AAUAGUGCAGCAUACU--------------U--UGCGGCGCCUGCUGUUGUACAUAUGAAAUGGCAUAGUUCAACUGGCUGUUAACAGUUGCGGC--CAA -...--.....-----...-....((((.(((....--------------.--))).)))).....((((.((.((((......)))))).))))(((((((........)))))--)). ( -25.50) >DroVir_CAF1 82750 105 + 1 -GACUAAAGGUGCAGGUAAAAAUAGUGCAGCGCAC--------------ACACACAAGCACACACACCUAUACAUGCGAAAUGGCAUAGUUCAACUGGCUGUUAACAGUUGCGGCGCCAA -.......(((((..((((.......(((((((..--------------........)).....((.....((((((......)))).)).....)))))))......)))).))))).. ( -24.82) >DroGri_CAF1 80195 118 + 1 -GACCAAAGGUACACGAAA-AAUAGUGCAGCAUGCUGGCCAUUCUACAUACAUACAUAUAUGUAUAUACAUACAUAUGAAAUGGCAUAGUUCAACUGGCUCUUAACAGCUGCGGCGCCAA -.(((...)))........-....((((.(((.((((((((((....(((((((....)))))))...(((....))).)))))).(((.....)))........))))))).))))... ( -28.50) >DroEre_CAF1 61151 93 + 1 -GAC--AAGGU-----AAA-AAUAGUGCAGCAUACU--------------U--UGCGGCGCCUGCUGUUGUACAUAUGAAAUGGCAUAGUUCAACUGGCUGUUAACAGUUGCGGC--CAA -...--.....-----...-....((((.(((....--------------.--))).)))).....((((.((.((((......)))))).))))(((((((........)))))--)). ( -25.50) >DroYak_CAF1 62601 93 + 1 -GAC--AAGGU-----AAA-AAUAGUGCAGCAUACU--------------U--UGCGGCGCCUGCUGUUGUACAUAUGAAAUGGCAUAGUUCAACUGGCUGUUAACAGUUGCGGC--CAA -...--.....-----...-....((((.(((....--------------.--))).)))).....((((.((.((((......)))))).))))(((((((........)))))--)). ( -25.50) >DroPer_CAF1 67847 94 + 1 GUAC--AAGGU-----AAA-AAUAGUGCAGCAUACU--------------U--UGCGGCGCCUGCUGUUGUACAUAUGAAAUGGCAUAGUUCAACUGGCUGUUAACAGUUGCGGC--CAA ((((--(((((-----(..-....((((.(((....--------------.--))).)))).)))).))))))........((((......((((((........))))))..))--)). ( -27.70) >consensus _GAC__AAGGU_____AAA_AAUAGUGCAGCAUACU______________U__UGCGGCGCCUGCUGUUGUACAUAUGAAAUGGCAUAGUUCAACUGGCUGUUAACAGUUGCGGC__CAA .........................((((((.......................(((((....)))))...........((((((.(((.....)))))))))....))))))....... (-15.56 = -15.48 + -0.08)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:34:57 2006