| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 13,572,700 – 13,572,790 |
| Length | 90 |
| Max. P | 0.965208 |
| Location | 13,572,700 – 13,572,790 |
|---|---|
| Length | 90 |
| Sequences | 5 |
| Columns | 90 |
| Reading direction | forward |
| Mean pairwise identity | 85.65 |
| Mean single sequence MFE | -29.40 |
| Consensus MFE | -23.60 |
| Energy contribution | -25.00 |
| Covariance contribution | 1.40 |
| Combinations/Pair | 1.00 |
| Mean z-score | -2.29 |
| Structure conservation index | 0.80 |
| SVM decision value | 1.58 |
| SVM RNA-class probability | 0.965208 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 13572700 90 + 23771897 UACGGCGCGCUAUUGUUGUGUCCUCGCAAGUGCGCUUGUCUGUGUGUGGCAGCCGCACAGAAAUUUAUGCGCACUUAUGUAUGUGUGUUU ...(((((((.......(((....)))((((((((...((((((((.(....))))))))).......))))))))......))))))). ( -32.50) >DroSec_CAF1 54290 80 + 1 UACGGCGCGCUAUUGUUGUGUCCUCGAGAGUGCGCGUGUCUGUGUGUGUCAGCCGCACAGAAAUUUAUGCGCAC----------GAGUGU ((((((((((....).)))))).......(((((((((((((((((.(....)))))))))....)))))))))----------..))). ( -31.60) >DroSim_CAF1 40447 80 + 1 UACGGCGCGCUAUUGUUGUGUCCUCGAAAGUGCGCGUGUCUGUGUGUGUCAUCCGCACCGAAAUUUAUGCGCAC----------GAGUGU ((((((((((....).)))))).......(((((((((((.(((((.(....)))))).))....)))))))))----------..))). ( -26.30) >DroEre_CAF1 55512 70 + 1 UACGGCGCGCUAUUGUUGUGUCCUCGAAAGUGCGCGUGUCUGUGUGUGUCAGCCGCACAGAGAUUUAUG--------------------U ....(((((((.(((.........))).)))))))((.((((((((.(....))))))))).)).....--------------------. ( -25.60) >DroYak_CAF1 56918 76 + 1 UACGGCGCGCUAUUGUUGUGUCCUCGAAAGUGCGCGUGUCUGUGUGUGUCAGCCGCACAGAAAUUUAUGCGCAC----------G----U ...(((((((....).)))))).......(((((((((((((((((.(....)))))))))....)))))))))----------.----. ( -31.00) >consensus UACGGCGCGCUAUUGUUGUGUCCUCGAAAGUGCGCGUGUCUGUGUGUGUCAGCCGCACAGAAAUUUAUGCGCAC__________G_GU_U ...(((((((....).)))))).......(((((((((((((((((.(....)))))))))....)))))))))................ (-23.60 = -25.00 + 1.40)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:34:53 2006