Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 13,564,559 – 13,564,663 |
Length | 104 |
Max. P | 0.942502 |
Location | 13,564,559 – 13,564,663 |
---|---|
Length | 104 |
Sequences | 6 |
Columns | 108 |
Reading direction | reverse |
Mean pairwise identity | 75.82 |
Mean single sequence MFE | -37.72 |
Consensus MFE | -22.95 |
Energy contribution | -23.03 |
Covariance contribution | 0.09 |
Combinations/Pair | 1.22 |
Mean z-score | -1.95 |
Structure conservation index | 0.61 |
SVM decision value | 1.33 |
SVM RNA-class probability | 0.942502 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 13564559 104 - 23771897 GGUGUGUGGUGUGGGGG---CAGGGAGGGGAGUGGCUUUUGGCGUCGCCUGCCCCGCAUGCAUUGCGGUUUCUGUUGCAUAAUUAUUAUGUUGCGGUUACUGUGCCC- (((.....(((((((((---((((((.(..((......))..).)).)))))))).)))))...(((((..((((.(((((.....))))).))))..)))))))).- ( -42.50) >DroPse_CAF1 53607 90 - 1 GCGGA---------GAG---CAUAGAGCGGAGUGACUGC------UGCCUGCCCCGCAUGCAUUGCGGUUUCUGUUGCAUAAUUAUUAUGUUGCGGUUGCCAACCUUC ((((.---------(.(---((...(((((.....))))------)...)))))))).........(((..((((.(((((.....))))).))))..)))....... ( -29.90) >DroSim_CAF1 32284 91 - 1 GGUAUG-----------------GAGGGGGAGUGGCUUUUGGCGUCGCCUGCCCCGCAUGCAUUGCGGUUUCUGUUGCAUAAUUAUUAUGUUGCGGUUACUGUGCCCC .(((((-----------------..((((.((((((.......)))).)).)))).)))))...(((((..((((.(((((.....))))).))))..)))))..... ( -34.50) >DroEre_CAF1 46884 108 - 1 GGUGUGGGGUGUGGGGUGGGGGGUGGAGGGAGUGGCUUUUGGCGUCGCCUGCCCCGCAUGCAUUGCGGUUUCUGUUGCAUAAUUAUUAUGUUGCGGUUACUGAGCCCC .....(((((((((((..((((((.(((((.....))))).)).)).))..))))))........((((..((((.(((((.....))))).))))..)))).))))) ( -46.60) >DroYak_CAF1 48559 100 - 1 GGCGGG--------GGAAGGGGGGGGGGGGAGUGGCUUUUGGCGUCGCCUGCCCCGCAUGCAUUGCGGUUUCUGUUGCAUAAUUAUUAUGUUGCGGUUACUGUGCCCC ...(((--------(...(.((((.(((.((.((.(....).)))).))).)))).).......(((((..((((.(((((.....))))).))))..))))).)))) ( -42.90) >DroPer_CAF1 53444 90 - 1 GCGGA---------GAG---CAUAGAGCGGAGUGACUGC------UGCCUGCCCCGCAUGCAUUGCGGUUUCUGUUGCAUAAUUAUUAUGUUGCGGUUGCCAACCUUC ((((.---------(.(---((...(((((.....))))------)...)))))))).........(((..((((.(((((.....))))).))))..)))....... ( -29.90) >consensus GGUGUG________GGG___CAGGGAGGGGAGUGGCUUUUGGCGUCGCCUGCCCCGCAUGCAUUGCGGUUUCUGUUGCAUAAUUAUUAUGUUGCGGUUACUGAGCCCC (((.......................((((.(((((.......)))))...))))(((.....)))(((..((((.(((((.....))))).))))..)))..))).. (-22.95 = -23.03 + 0.09)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:34:45 2006