Locus 4835

Sequence ID	3L_DroMel_CAF1
Location	13,564,098 – 13,564,190
Length	92
Max. P	0.617660

overview

Window 5

Location	13,564,098 – 13,564,190
Length	92
Sequences	5
Columns	92
Reading direction	forward
Mean pairwise identity	90.31
Mean single sequence MFE	-25.92
Consensus MFE	-19.96
Energy contribution	-19.20
Covariance contribution	-0.76
Combinations/Pair	1.33
Mean z-score	-1.57
Structure conservation index	0.77
SVM decision value	0.17
SVM RNA-class probability	0.617660
Prediction	RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 13564098 92 + 23771897
UUCUUAGCAUACCAAGCACAGACCCAUGUCAAAAGGGAGCACUCUAACAUCGGUGGAAUGUGGCCUAGAAGUUGGCAUAGCUUGGGGCAUAU
......((...(((((((((.(((.((((....((((....)))).)))).)))....))).(((........)))...)))))).)).... ( -26.20)
>DroSec_CAF1 45724 90 + 1
UUCUUAGCAUACCCAGC--AGACCCAUGUCAAAAGGGAGCACUCUAACAGCGGAGGAAUGUGGUCCAGAAGUUGGCAUAGUUUGGGGUAUAU
........((((((..(--((((..(((((((...(((.((((((..(...)..)))..))).))).....))))))).))))))))))).. ( -27.40)
>DroSim_CAF1 31831 90 + 1
UUCUUAGCAUACCAAGC--AGACCCAUGUCAAAAGGGAGCACUCUAACAUCAGAGGAAUGUGGCCCAGAAGUUGGCAUAGUUUGGGGUAUAU
........(((((...(--((((..(((((((..(((.(((((((......))))...)))..))).....))))))).))))).))))).. ( -25.20)
>DroEre_CAF1 46416 90 + 1
UUCUUAGCAUACCAAAC--GGACCCAUGUCAAAAGGGAACACUCUAACAUCAGUGGAAUGUGGCCCAGAAGUUGGCUUAGUUUGGGGCAUGA
......((...((((((--.((.(((..((....(((.(((.((((.......)))).)))..))).))...))).)).)))))).)).... ( -23.80)
>DroYak_CAF1 48095 90 + 1
UUCUUAGCAUACCAAAC--AGACCCAUGUCAAAAGGGAACACUCCAACAUCAGUGGAAUGUGGCCCAGAACUGGGCUUAGUUUGGGGUAUAU
......((...((((((--...(((.........))).(((.((((.......)))).)))((((((....))))))..)))))).)).... ( -27.00)
>consensus
UUCUUAGCAUACCAAGC__AGACCCAUGUCAAAAGGGAGCACUCUAACAUCAGUGGAAUGUGGCCCAGAAGUUGGCAUAGUUUGGGGUAUAU
......((...((((((...(((....)))....(((.(((.((((.......)))).)))..))).............)))))).)).... (-19.96 = -19.20 +  -0.76)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:34:44 2006