Locus 4833

Sequence ID 3L_DroMel_CAF1
Location 13,563,109 – 13,563,201
Length 92
Max. P 0.548051
window7621

overview

Window 1

Location 13,563,109 – 13,563,201
Length 92
Sequences 6
Columns 93
Reading direction reverse
Mean pairwise identity 87.67
Mean single sequence MFE -24.73
Consensus MFE -20.14
Energy contribution -19.70
Covariance contribution -0.44
Combinations/Pair 1.25
Mean z-score -1.82
Structure conservation index 0.81
SVM decision value 0.03
SVM RNA-class probability 0.548051
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 13563109 92 - 23771897
CACGUUGUCCAGUGGCAAAUUGCUUAUGAAAUUGCAAUUUGAGCUCACUCAGGGCACUGAUUUUUAUUUAAUUUGGCCUGCAG-UGCCAGUCC
..((.((((((((((((((((((..........))))))))...)))))..))))).)).............((((((....)-.)))))... ( -23.80)
>DroPse_CAF1 51851 91 - 1
UCUCUCGUCCAGUGGCAAAUUGCUUAUGAAAUUGCAAUUUGAGCCCGCUCUGGACACUGAUUUUUAUUUAAUUUGGCUUGCGGAUGCCUA--A
......((((((.((((((((((..........)))))))..)))....))))))...................(((........)))..--. ( -24.00)
>DroSim_CAF1 30836 92 - 1
CACGUUGCCCGGUGGCAAAUUGCUUAUGAAAUUGCAAUUUGAGCUCACUCAGGGCACUGAUUUUUAUUUAAUUUGGCCUGCAG-UGCCAGUAC
..((.((((((((((((((((((..........))))))))...)))))..))))).)).............((((((....)-.)))))... ( -26.50)
>DroEre_CAF1 45425 92 - 1
UAAGUUGUCCAGUGGCAAAUUGCUUAUGAAAUUGCAAUUUGAGCUCACUCAGGGCACUGAUUUUUAUUUAAUUUCGACUGCAG-UGCCCGUCC
..........(((((((((((((..........))))))))...)))))..((((((((.....................)))-))))).... ( -25.40)
>DroYak_CAF1 47142 92 - 1
UACGUUGUCCAGUGGCAAAUUGCUUAUGAAAUUGCAAUUUGAGCUCACUCAGGGCACUGAUUUUUAUUUAAUUUGGACUGCAG-UGCCAGCCC
.............((((((((((..........)))))))(((....)))..(((((((...((((.......))))...)))-)))).))). ( -24.70)
>DroPer_CAF1 51704 91 - 1
UCUCUCGUCCAGUGGCAAAUUGCUUAUGAAAUUGCAAUUUGAGCCCGCUCUGGACACUGAUUUUUAUUUAAUUUGGCUUGCGGAUGCCUA--A
......((((((.((((((((((..........)))))))..)))....))))))...................(((........)))..--. ( -24.00)
>consensus
UACGUUGUCCAGUGGCAAAUUGCUUAUGAAAUUGCAAUUUGAGCUCACUCAGGGCACUGAUUUUUAUUUAAUUUGGCCUGCAG_UGCCAGUCC
......(((((((((((((((((..........))))))))...)))))..))))...................(((........)))..... (-20.14 = -19.70 +  -0.44)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:34:41 2006