Locus 4832

Sequence ID 3L_DroMel_CAF1
Location 13,561,412 – 13,561,506
Length 94
Max. P 0.551448
window7620

overview

Window 0

Location 13,561,412 – 13,561,506
Length 94
Sequences 6
Columns 99
Reading direction forward
Mean pairwise identity 82.90
Mean single sequence MFE -23.72
Consensus MFE -14.72
Energy contribution -14.17
Covariance contribution -0.55
Combinations/Pair 1.13
Mean z-score -2.10
Structure conservation index 0.62
SVM decision value 0.04
SVM RNA-class probability 0.551448
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 13561412 94 + 23771897
-----GAGAAGCUUCAUGCUCGGCCACAACUUGCACAUUUGCAAUACAAAUUUGCAAUGUCAUUAAUGUAUGGGAAACCCCAGUGCUGGACAGCCACCA
-----..((.((.....))))(((......(((((.(((((.....))))).)))))((((......(((((((....)))).)))..))))))).... ( -25.20)
>DroPse_CAF1 50004 87 + 1
CUGGAUG--GUAUUCAUGCCUGGCCACAACUUGCACAUUUGCAAUACAAAUUUGCAAUGCCAUUAAUGUAUGGGAAACCCCAAUUCUC----------C
..(((..--((...(((...((((......(((((.(((((.....))))).))))).))))...)))..((((....))))))..))----------) ( -19.80)
>DroSim_CAF1 29148 94 + 1
-----GAGCAGCUUCAUGCUCGGCCACAACUUGCACAUUUGCAAUACAAAUUUGCAAUGUCAUUAAUGUAUGGGAAACCCCAGUGCUGGACAGCCACCA
-----(((((......)))))(((......(((((.(((((.....))))).)))))((((......(((((((....)))).)))..))))))).... ( -30.20)
>DroEre_CAF1 43719 90 + 1
-----GGGAAGCUUCAUGCUCGGCCACAACUUGCACAUUUGCAAUACAAAUUUGCAAUGUCAUUAAUGUAUGGGAAACCCCAGUGCUGGACAACC----
-----.((.(((.....)))...))....((.((((..((((((.......)))))).............((((....)))))))).))......---- ( -22.30)
>DroYak_CAF1 45451 90 + 1
-----GGGCAGCUUCAUGCUCGGCCACAACUUGCACAUUUGCAAUACAAAUUUGCAAUGUCAUUAAUGUAUGGGAAACCCCAGUGCUGGACAACC----
-----((.((((.....))).).))....((.((((..((((((.......)))))).............((((....)))))))).))......---- ( -25.00)
>DroPer_CAF1 49848 87 + 1
CUGGAUG--GUAUUCAUGCCUGGCCACAACUUGCACAUUUGCAAUACAAAUUUGCAAUGCCAUUAAUGUAUGGGAAACCCCAAUUCUC----------C
..(((..--((...(((...((((......(((((.(((((.....))))).))))).))))...)))..((((....))))))..))----------) ( -19.80)
>consensus
_____GGG_AGCUUCAUGCUCGGCCACAACUUGCACAUUUGCAAUACAAAUUUGCAAUGUCAUUAAUGUAUGGGAAACCCCAGUGCUGGACA_CC____
.........(((..(((....(((......(((((.(((((.....))))).))))).)))....)))..((((....))))..)))............ (-14.72 = -14.17 +  -0.55)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:34:40 2006