Locus 4831

Sequence ID 3L_DroMel_CAF1
Location 13,561,286 – 13,561,379
Length 93
Max. P 0.583888
window7619

overview

Window 9

Location 13,561,286 – 13,561,379
Length 93
Sequences 4
Columns 93
Reading direction forward
Mean pairwise identity 87.38
Mean single sequence MFE -24.30
Consensus MFE -15.30
Energy contribution -16.55
Covariance contribution 1.25
Combinations/Pair 1.00
Mean z-score -2.13
Structure conservation index 0.63
SVM decision value 0.10
SVM RNA-class probability 0.583888
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 13561286 93 + 23771897
UCCAUCUGCUUGACCCUUAUGGGUAAACCUUUGACAUCGCCCCUCCCCCCCAAAAAAAAGGGGAAUUGCUGCGACAAUUGAGUUGCACGAGAU
........((((((((....))))..............((...(((((...........)))))...))((((((......)))))))))).. ( -24.00)
>DroSec_CAF1 42935 84 + 1
UCCAUCUGCUUGACCCUAAUGGGUAAACCUUUGACUUC---------CCGCAAAAAAAAGGGGAAUUGCUGCGACAAUUGAGUUGCACCAGAU
...(((((....((((....))))...........(((---------((..........))))).....((((((......)))))).))))) ( -21.10)
>DroSim_CAF1 29032 83 + 1
UCCAUCUGCUUGACCCUAAUGGGUAAACCUUUGACUUU---------CCCCAAA-AAAAGGGGAAUUGCUGCGACAAUUGAGUUGCACCAGAU
...(((((....((((....))))............((---------((((...-....))))))....((((((......)))))).))))) ( -24.70)
>DroEre_CAF1 43603 83 + 1
UCCAUCUGGUUGACCCUAAUGGGUCAAGCUUUGGCUAC---------CCC-AAAAAAAAGGGGAAUUGCUGCGACAAUUGAGUUGAACGAGAU
...(((((.(((((((....))))))).)((..(((.(---------(((-........))))(((((......))))).)))..))..)))) ( -27.40)
>consensus
UCCAUCUGCUUGACCCUAAUGGGUAAACCUUUGACUUC_________CCCCAAAAAAAAGGGGAAUUGCUGCGACAAUUGAGUUGCACCAGAU
...(((((....((((....)))).......................((((........))))......((((((......)))))).))))) (-15.30 = -16.55 +   1.25)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:34:39 2006