Locus 483

Sequence ID 3L_DroMel_CAF1
Location 1,363,431 – 1,363,583
Length 152
Max. P 0.976253
window714 window715

overview

Window 4

Location 1,363,431 – 1,363,550
Length 119
Sequences 5
Columns 119
Reading direction reverse
Mean pairwise identity 90.59
Mean single sequence MFE -35.84
Consensus MFE -32.08
Energy contribution -31.68
Covariance contribution -0.40
Combinations/Pair 1.10
Mean z-score -1.75
Structure conservation index 0.90
SVM decision value 1.77
SVM RNA-class probability 0.976253
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 1363431 119 - 23771897
AAUUGAACCAUAUUUCCCAUACCGGGAAUUGAACCCGGGCCUUCCGGGUGAGAGCCGGAUAUCCUAACCACUAGACAAUAUGGGAUAUGAAUACGUGGCGCGCCAAAAGCCAACUUCAG
...((((.((((..(((((((((((...((..((((((.....))))))..)).)))).....(((.....)))....)))))))))))......((((.........))))..)))). ( -36.50)
>DroSec_CAF1 18717 118 - 1
UA-UGAACCAUAUUUCCCAUACCGGGAAUUGAACCCGGGCCUUCCGGGUGAGAGCCGGAUAUCCUAACCACUAGACAAUAUGGGAUAUGAAUACGUGGCGCGCCAAAAGCCAACUUCAG
..-((((.((((..(((((((((((...((..((((((.....))))))..)).)))).....(((.....)))....)))))))))))......((((.........))))..)))). ( -36.60)
>DroEre_CAF1 19763 118 - 1
A-CUGUUCCAUAUUUCCCAUACCGGGAAUUGAACCCGGGCCUUCCGGGUGAGAGCCGGAUAUCCUAACCACUAGACAAUAUGGGAUAUGACAACGUGGCGCGCCAAAAGCCAACUUCAG
.-(((...((((..(((((((((((...((..((((((.....))))))..)).)))).....(((.....)))....)))))))))))......((((.........))))....))) ( -35.90)
>DroYak_CAF1 20452 119 - 1
AUCUAUUCCAUAUUUCCCAUACCGGGAAUUGAACCCGGGCCUUCCGGGUGAGAGCCGGAUAUCCUAACCACUAGACAAUAUGGGAUAUAACUACGUGGCACGCCAAAAGCCAACUUCAU
..........(((.(((((((((((...((..((((((.....))))))..)).)))).....(((.....)))....))))))).)))......((((.........))))....... ( -33.80)
>DroAna_CAF1 20082 119 - 1
AUGCAAAAAAAGUUUCCCAUACCGGGAAUCGAACCCGGGCCUUCCGGGUGAGAGCCGGAUAUCCUAACCACUAGACAAUAUGGGACUUGAAGACGUGGCGCGCCAACUCCGAACUUCAG
..............(((((((((((...((..((((((.....))))))..)).)))).....(((.....)))....)))))))..(((((...(((.(......).)))..))))). ( -36.40)
>consensus
AACUGAACCAUAUUUCCCAUACCGGGAAUUGAACCCGGGCCUUCCGGGUGAGAGCCGGAUAUCCUAACCACUAGACAAUAUGGGAUAUGAAUACGUGGCGCGCCAAAAGCCAACUUCAG
........((((..(((((((((((...((..((((((.....))))))..)).)))).....(((.....)))....)))))))))))......(((....))).............. (-32.08 = -31.68 +  -0.40)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Window 5

Location 1,363,470 – 1,363,583
Length 113
Sequences 4
Columns 118
Reading direction reverse
Mean pairwise identity 85.10
Mean single sequence MFE -24.89
Consensus MFE -19.50
Energy contribution -19.50
Covariance contribution 0.00
Combinations/Pair 1.00
Mean z-score -1.51
Structure conservation index 0.78
SVM decision value 0.12
SVM RNA-class probability 0.593138
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 1363470 113 - 23771897
---ACACCAUCAAAUUAU--UUGUUUAUUCAAAAAAUGAAUUGAACCAUAUUUCCCAUACCGGGAAUUGAACCCGGGCCUUCCGGGUGAGAGCCGGAUAUCCUAACCACUAGACAAUA
---...............--((((((((((((........)))))((....(((((.....)))))((..((((((.....))))))..))...)).............))))))).. ( -25.30)
>DroSec_CAF1 18756 117 - 1
AAAACAGCAAUAAUAUGGUAAUGUUUAUUAAAAAAAAGUA-UGAACCAUAUUUCCCAUACCGGGAAUUGAACCCGGGCCUUCCGGGUGAGAGCCGGAUAUCCUAACCACUAGACAAUA
......((...((((((((.((((((.........)))))-)..))))))))((((.....)))).((..((((((.....))))))..)))).((....))................ ( -25.00)
>DroEre_CAF1 19802 113 - 1
A--ACAGCAUUAUAAUAU--UCGUGUAUUGAAAAGAAAA-CUGUUCCAUAUUUCCCAUACCGGGAAUUGAACCCGGGCCUUCCGGGUGAGAGCCGGAUAUCCUAACCACUAGACAAUA
.--......(((..((((--(((.((.............-...........(((((.....)))))((..((((((.....))))))..)))))))))))..)))............. ( -24.50)
>DroYak_CAF1 20491 115 - 1
A--AAAGUUGUAUAAUAU-AUUAUGUAUUCAAAAAAAAAUCUAUUCCAUAUUUCCCAUACCGGGAAUUGAACCCGGGCCUUCCGGGUGAGAGCCGGAUAUCCUAACCACUAGACAAUA
.--...(((((.......-.....((((((.....................(((((.....)))))((..((((((.....))))))..))...))))))............))))). ( -24.75)
>consensus
A__ACAGCAUUAAAAUAU__UUGUGUAUUCAAAAAAAAAACUGAACCAUAUUUCCCAUACCGGGAAUUGAACCCGGGCCUUCCGGGUGAGAGCCGGAUAUCCUAACCACUAGACAAUA
.............................................((....(((((.....)))))((..((((((.....))))))..))...))...................... (-19.50 = -19.50 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:43:04 2006