Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 1,363,431 – 1,363,583 |
Length | 152 |
Max. P | 0.976253 |
Location | 1,363,431 – 1,363,550 |
---|---|
Length | 119 |
Sequences | 5 |
Columns | 119 |
Reading direction | reverse |
Mean pairwise identity | 90.59 |
Mean single sequence MFE | -35.84 |
Consensus MFE | -32.08 |
Energy contribution | -31.68 |
Covariance contribution | -0.40 |
Combinations/Pair | 1.10 |
Mean z-score | -1.75 |
Structure conservation index | 0.90 |
SVM decision value | 1.77 |
SVM RNA-class probability | 0.976253 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 1363431 119 - 23771897 AAUUGAACCAUAUUUCCCAUACCGGGAAUUGAACCCGGGCCUUCCGGGUGAGAGCCGGAUAUCCUAACCACUAGACAAUAUGGGAUAUGAAUACGUGGCGCGCCAAAAGCCAACUUCAG ...((((.((((..(((((((((((...((..((((((.....))))))..)).)))).....(((.....)))....)))))))))))......((((.........))))..)))). ( -36.50) >DroSec_CAF1 18717 118 - 1 UA-UGAACCAUAUUUCCCAUACCGGGAAUUGAACCCGGGCCUUCCGGGUGAGAGCCGGAUAUCCUAACCACUAGACAAUAUGGGAUAUGAAUACGUGGCGCGCCAAAAGCCAACUUCAG ..-((((.((((..(((((((((((...((..((((((.....))))))..)).)))).....(((.....)))....)))))))))))......((((.........))))..)))). ( -36.60) >DroEre_CAF1 19763 118 - 1 A-CUGUUCCAUAUUUCCCAUACCGGGAAUUGAACCCGGGCCUUCCGGGUGAGAGCCGGAUAUCCUAACCACUAGACAAUAUGGGAUAUGACAACGUGGCGCGCCAAAAGCCAACUUCAG .-(((...((((..(((((((((((...((..((((((.....))))))..)).)))).....(((.....)))....)))))))))))......((((.........))))....))) ( -35.90) >DroYak_CAF1 20452 119 - 1 AUCUAUUCCAUAUUUCCCAUACCGGGAAUUGAACCCGGGCCUUCCGGGUGAGAGCCGGAUAUCCUAACCACUAGACAAUAUGGGAUAUAACUACGUGGCACGCCAAAAGCCAACUUCAU ..........(((.(((((((((((...((..((((((.....))))))..)).)))).....(((.....)))....))))))).)))......((((.........))))....... ( -33.80) >DroAna_CAF1 20082 119 - 1 AUGCAAAAAAAGUUUCCCAUACCGGGAAUCGAACCCGGGCCUUCCGGGUGAGAGCCGGAUAUCCUAACCACUAGACAAUAUGGGACUUGAAGACGUGGCGCGCCAACUCCGAACUUCAG ..............(((((((((((...((..((((((.....))))))..)).)))).....(((.....)))....)))))))..(((((...(((.(......).)))..))))). ( -36.40) >consensus AACUGAACCAUAUUUCCCAUACCGGGAAUUGAACCCGGGCCUUCCGGGUGAGAGCCGGAUAUCCUAACCACUAGACAAUAUGGGAUAUGAAUACGUGGCGCGCCAAAAGCCAACUUCAG ........((((..(((((((((((...((..((((((.....))))))..)).)))).....(((.....)))....)))))))))))......(((....))).............. (-32.08 = -31.68 + -0.40)
Location | 1,363,470 – 1,363,583 |
---|---|
Length | 113 |
Sequences | 4 |
Columns | 118 |
Reading direction | reverse |
Mean pairwise identity | 85.10 |
Mean single sequence MFE | -24.89 |
Consensus MFE | -19.50 |
Energy contribution | -19.50 |
Covariance contribution | 0.00 |
Combinations/Pair | 1.00 |
Mean z-score | -1.51 |
Structure conservation index | 0.78 |
SVM decision value | 0.12 |
SVM RNA-class probability | 0.593138 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 1363470 113 - 23771897 ---ACACCAUCAAAUUAU--UUGUUUAUUCAAAAAAUGAAUUGAACCAUAUUUCCCAUACCGGGAAUUGAACCCGGGCCUUCCGGGUGAGAGCCGGAUAUCCUAACCACUAGACAAUA ---...............--((((((((((((........)))))((....(((((.....)))))((..((((((.....))))))..))...)).............))))))).. ( -25.30) >DroSec_CAF1 18756 117 - 1 AAAACAGCAAUAAUAUGGUAAUGUUUAUUAAAAAAAAGUA-UGAACCAUAUUUCCCAUACCGGGAAUUGAACCCGGGCCUUCCGGGUGAGAGCCGGAUAUCCUAACCACUAGACAAUA ......((...((((((((.((((((.........)))))-)..))))))))((((.....)))).((..((((((.....))))))..)))).((....))................ ( -25.00) >DroEre_CAF1 19802 113 - 1 A--ACAGCAUUAUAAUAU--UCGUGUAUUGAAAAGAAAA-CUGUUCCAUAUUUCCCAUACCGGGAAUUGAACCCGGGCCUUCCGGGUGAGAGCCGGAUAUCCUAACCACUAGACAAUA .--......(((..((((--(((.((.............-...........(((((.....)))))((..((((((.....))))))..)))))))))))..)))............. ( -24.50) >DroYak_CAF1 20491 115 - 1 A--AAAGUUGUAUAAUAU-AUUAUGUAUUCAAAAAAAAAUCUAUUCCAUAUUUCCCAUACCGGGAAUUGAACCCGGGCCUUCCGGGUGAGAGCCGGAUAUCCUAACCACUAGACAAUA .--...(((((.......-.....((((((.....................(((((.....)))))((..((((((.....))))))..))...))))))............))))). ( -24.75) >consensus A__ACAGCAUUAAAAUAU__UUGUGUAUUCAAAAAAAAAACUGAACCAUAUUUCCCAUACCGGGAAUUGAACCCGGGCCUUCCGGGUGAGAGCCGGAUAUCCUAACCACUAGACAAUA .............................................((....(((((.....)))))((..((((((.....))))))..))...))...................... (-19.50 = -19.50 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:43:04 2006