Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 13,558,462 – 13,558,561 |
Length | 99 |
Max. P | 0.593111 |
Location | 13,558,462 – 13,558,561 |
---|---|
Length | 99 |
Sequences | 6 |
Columns | 116 |
Reading direction | forward |
Mean pairwise identity | 79.56 |
Mean single sequence MFE | -22.98 |
Consensus MFE | -11.96 |
Energy contribution | -12.77 |
Covariance contribution | 0.81 |
Combinations/Pair | 1.21 |
Mean z-score | -2.01 |
Structure conservation index | 0.52 |
SVM decision value | 0.12 |
SVM RNA-class probability | 0.593111 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 13558462 99 + 23771897 CGCGCGUGUG----UGUAUUUAAAUAAAAUUUUAAGUGCAAUUAAAAAACAUUUUUGC--------AAGAAUCGCCUCGUGCACUCUUGCAUGAAA-AUCAACAUCGACAUC---- .(((.((((.----((((((((((......))))))))))...........(((.(((--------((((...((.....))..))))))).))).-....)))))).)...---- ( -20.80) >DroGri_CAF1 57234 108 + 1 GACAUAUGUGC-AGCGCAUUUAAAUAAAAUUGUAAGUGCAAUUAAAAAACAUUUUUGCCAUCGCACAAGAAUCGCUCGGUGCUCUCUACCAUGCAAAGCCAAUAUGGAG------- ..(((((.(((-((((((((((.(......).)))))))...........(((((((........))))))).))..((((.....)))).))))......)))))...------- ( -20.40) >DroSec_CAF1 40109 97 + 1 -----AUGUGA-GGGGCAUUUAAAUAAAAUUUUAAGUGCAAUUAAAAAACAUUUUUGC--------AAGAAUCGCCUUGUGCACUCUUGCAUGAAA-AUCAACAUCGACAUC---- -----(((..(-((((((((((((......))))))))).................((--------(((......)))))...))))..)))....-...............---- ( -23.20) >DroYak_CAF1 42293 102 + 1 CGUGUGUAUGA-GGAGCAUUUAAAUAAAAUUUUAAGUGCAAUUAAAAAACAUUUUUGC--------AAGAAUCGCCUCGUGCACUCUUGCAUGAAA-AUCAACAUCGACAUC---- .(.((((((((-((.(((((((((......)))))))))...(((((.....))))).--------........)))))))))).)(((.((....-)))))..........---- ( -24.70) >DroAna_CAF1 42508 96 + 1 ------UGUGU-GGGGCAUUUAAAUAAAAUUUUAAGUGCAAUUUAAAAACAUUUUCGC--------AAGAAUCUCUCCGGGCACUCUUGCAUGAAA-AUUAACAUUGGCAUG---- ------.((((-.(((((((((((......)))))))))...........((((((((--------((((..((.....))...))))))..))))-)).....)).)))).---- ( -21.60) >DroPer_CAF1 46646 107 + 1 UGUGUGUGUGUGGGAGCAUUUAAAUAAAAUUUUAAGUGCAAUUAAAAAACAUUUUUGC--------AAGAAUCGCUUCGUGCACUCUAGCAUGAAA-AUCAACAUGGACAUAGGGG (((((.(((((..(((((((((((......)))))))))...................--------.........(((((((......))))))).-.)).))))).))))).... ( -27.20) >consensus _G_GUGUGUGA_GGAGCAUUUAAAUAAAAUUUUAAGUGCAAUUAAAAAACAUUUUUGC________AAGAAUCGCCUCGUGCACUCUUGCAUGAAA_AUCAACAUCGACAUC____ .....((((......(((((((((......))))))))).....................................((((((......)))))).......))))........... (-11.96 = -12.77 + 0.81)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:34:37 2006