| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 13,548,130 – 13,548,236 |
| Length | 106 |
| Max. P | 0.569487 |
| Location | 13,548,130 – 13,548,236 |
|---|---|
| Length | 106 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 84.67 |
| Mean single sequence MFE | -36.43 |
| Consensus MFE | -26.15 |
| Energy contribution | -25.35 |
| Covariance contribution | -0.80 |
| Combinations/Pair | 1.21 |
| Mean z-score | -2.21 |
| Structure conservation index | 0.72 |
| SVM decision value | 0.07 |
| SVM RNA-class probability | 0.569487 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 13548130 106 - 23771897 ACGCCAUUGUUGCUCAGCGCCUAAAAGAAGACGAGGCGAAGUUGAAUUUCUAAUGUGCAGCAGCUGCUAACAAUGGAAGUGGGGAAU-----------CGGAG--UGGCAGGUGG-ACGG .(((((((((..(((...((((...........))))((..((..(((((((.(((..(((....))).))).)))))))..))..)-----------).)))--..))).))))-.)). ( -35.20) >DroPse_CAF1 40538 114 - 1 ACGCCAUUGUUGCGCGGCGCCUAAAAGAAGACGAGGCGAAGUUGAAUUUCUAAUGUGCAGCAGCUGCUAACAAUGGAAGUGUGGGGCGGUGGCGGCGGCGGUGUGAGGCAGGUG------ .((((((((((.(((..(((((...........))))).......(((((((.(((..(((....))).))).)))))))))).))))))))))((.((........))..)).------ ( -40.60) >DroEre_CAF1 35873 105 - 1 ACGCCAUUGUUGCUCAGCGCCUAAAAGAAGACGAGGCGAAGUUGAAUUUCUAAUGUGCAGCAGCUGCUAACAAUGGAAGUGGGG-AU-----------CGGAG--UGGCAGGUGG-ACGG .(((((((((..(((..(((((...........))))).......(((((((.(((..(((....))).))).)))))))....-..-----------..)))--..))).))))-.)). ( -35.10) >DroYak_CAF1 37353 106 - 1 ACGCCAUUGUUGCUCAGCGCCUAAAAGAAGACGAGGCGAAGUUGAAUUUCUAAUGUGCAGCAGCUGCUAACAAUGGAAGUGGGGAAU-----------CAGAG--UGGCAGGUGG-ACGG .(((((((((..(((...((((...........))))((..((..(((((((.(((..(((....))).))).)))))))..))..)-----------).)))--..))).))))-.)). ( -35.40) >DroAna_CAF1 37468 105 - 1 ACGCCAUUGUUGCUCAGCGCCUAAAAGAAGACGAGGCGAAGUUGAAUUUCUAAUGUGCAGCAGCUGCUAACAAUAAAAGUGUUGG-------------GGGAC--UAACGGGCGAUACGG .(((((((((((..((((((((...........))))...((((.((.......)).)))).)))).))))))).....((((((-------------....)--)))))))))...... ( -33.40) >DroPer_CAF1 40475 108 - 1 ACGCCAUUGUUGCGCGGCGCCUAAAAGAAGACGAGGCGAAGUUGAAUUUCUAAUGUGCAGCAGCUGCUAACAAUGGAAGUGUGGGGCGGUGG------CGGUGUGAGGCAGGUG------ .((((((((((.(((..(((((...........))))).......(((((((.(((..(((....))).))).)))))))))).))))))))------))..............------ ( -38.90) >consensus ACGCCAUUGUUGCUCAGCGCCUAAAAGAAGACGAGGCGAAGUUGAAUUUCUAAUGUGCAGCAGCUGCUAACAAUGGAAGUGGGGGAU___________CGGAG__UGGCAGGUGG_ACGG .((((..((((.(((..(((((...........))))).......(((((((.(((..(((....))).))).)))))))....................)))...))))))))...... (-26.15 = -25.35 + -0.80)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:34:32 2006