Locus 4826

Sequence ID 3L_DroMel_CAF1
Location 13,543,880 – 13,543,970
Length 90
Max. P 0.660201
window7610

overview

Window 0

Location 13,543,880 – 13,543,970
Length 90
Sequences 5
Columns 90
Reading direction forward
Mean pairwise identity 90.86
Mean single sequence MFE -23.30
Consensus MFE -17.46
Energy contribution -17.66
Covariance contribution 0.20
Combinations/Pair 1.00
Mean z-score -1.78
Structure conservation index 0.75
SVM decision value 0.27
SVM RNA-class probability 0.660201
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 13543880 90 + 23771897
AUAGAUUUGCGGGCCAUCCCAAAAAGUAUGCUGCAUGUCUCGCCUUGCUCUUGGGCAGGUUACCCCACAUGCACACCACCAUCCCAAAAU
.....((((.(((....)))........((.(((((((...((((.(((....)))))))......))))))))).........)))).. ( -20.40)
>DroSec_CAF1 31062 90 + 1
AUAGAUUUGCGGGCCAUCCCAAAAAGUGUGCUGCAUGUCUCGCCUUGCUCUUGGGCAGGUUACCCCACAUGCACGCCAUCGCCCCGAAAU
.....((((.((((...........(((.(((((((((...((((.(((....)))))))......))))))).))))).)))))))).. ( -27.50)
>DroSim_CAF1 17167 90 + 1
AUAGAUUUGCGGGCCAUCCCAAAAAGUACGCUGCAUGUCUCGCCUUGCUCUUGGGCAGGUUACCCCACAUGCACACCAUCACCCCCAAAA
.....((((.(((...........((....))((((((...((((.(((....)))))))......)))))).........))).)))). ( -21.20)
>DroEre_CAF1 31527 84 + 1
AUAGAUUUGCCGACCAUCCCAAAAAGUAUGCUGCAUGUCUCGCCUUGCUCUUGGGCAGGUUACCCCACAUGCAG-C-----CCCCCAAUU
.............................(((((((((...((((.(((....)))))))......))))))))-)-----......... ( -21.80)
>DroYak_CAF1 33084 87 + 1
AUAGAUUUGCGGACCAUCCCAAAAAGUAUGCUGCAUGUCUCGCCUUGCUCUUGGGCAGGUUACCCCACAUGCAG-CCAU--CCCCCAAUU
.....((((.((.....))))))......(((((((((...((((.(((....)))))))......))))))))-)...--......... ( -25.60)
>consensus
AUAGAUUUGCGGGCCAUCCCAAAAAGUAUGCUGCAUGUCUCGCCUUGCUCUUGGGCAGGUUACCCCACAUGCAC_CCAUC_CCCCCAAAU
.....((((.((.....))))))........(((((((...((((.(((....)))))))......)))))))................. (-17.46 = -17.66 +   0.20)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:34:31 2006