Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 13,541,512 – 13,541,605 |
Length | 93 |
Max. P | 0.618254 |
Location | 13,541,512 – 13,541,605 |
---|---|
Length | 93 |
Sequences | 6 |
Columns | 98 |
Reading direction | forward |
Mean pairwise identity | 82.12 |
Mean single sequence MFE | -19.65 |
Consensus MFE | -12.76 |
Energy contribution | -13.28 |
Covariance contribution | 0.53 |
Combinations/Pair | 1.05 |
Mean z-score | -1.83 |
Structure conservation index | 0.65 |
SVM decision value | 0.17 |
SVM RNA-class probability | 0.618254 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 13541512 93 + 23771897 UUUUCUUCGUCAGGCAGCUUAUACCGCAUUAGACUUGCAAUGGC-AAAUAUUUGUAAUUGCCUGAUGCCUCAAUAAGCCACGCAUCCCGCUCCG---- ............((..((((((...(((((((....(((((.((-((....)))).))))))))))))....))))))...((.....)).)).---- ( -21.70) >DroSec_CAF1 28709 93 + 1 UUUUCUUCGUCAGGCAGCUUAUACCGCAUUAGACUUGCAAUGGC-AAAUAUUUGUAAUUGCCUGAUGCCUCAAUAAGCCACGCAUCCCGCUCCA---- ............((..((((((...(((((((....(((((.((-((....)))).))))))))))))....))))))...((.....)).)).---- ( -21.70) >DroSim_CAF1 14791 93 + 1 UUUUCUUCGUCAGGCAGCUUAUACCGCAUUAGACUUGCAAUAGC-AAAUAUUUGUAAUUGCCUGAUGCCUCAAUAAGCCACGCAUCCCGCUCCA---- ............((..((((((...(((((((....(((((.((-((....)))).))))))))))))....))))))...((.....)).)).---- ( -21.70) >DroEre_CAF1 29104 93 + 1 UUUUCUUCGUCUAACAGCUUACAACGCAUUAGACUUGCAAUGGC-AAAUAUUUGUAAUUGCCUGAUGCCUCAAUAAGCCUCGAAAACCGCUCCC---- .....((((.......(((((....(((((((....(((((.((-((....)))).)))))))))))).....)))))..))))..........---- ( -19.40) >DroYak_CAF1 30758 80 + 1 UUUUCUUCGUCAGACAGCUUAUACCGCAUUAGACUUGCAAUGGC-AAAUAUUUGUAAUUGCCUGAUGCCUCAAUAAGCCUC----------------- ................((((((...(((((((....(((((.((-((....)))).))))))))))))....))))))...----------------- ( -19.80) >DroPer_CAF1 32942 91 + 1 UCUUCUUUAUU--GAAGCUUAGAACGCAUUUGACGUGCAACGGGAAAAUAUUUGUAAUUGCCUAAUGCCUCAAUAAUCCCAAAUUCCC-----AGACC ......(((((--((.((((((...((((.....)))).(((((......)))))......)))).)).)))))))............-----..... ( -13.60) >consensus UUUUCUUCGUCAGGCAGCUUAUACCGCAUUAGACUUGCAAUGGC_AAAUAUUUGUAAUUGCCUGAUGCCUCAAUAAGCCACGCAUCCCGCUCCA____ ................((((((...(((((((.(.(((((...........)))))...).)))))))....)))))).................... (-12.76 = -13.28 + 0.53)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:34:30 2006