| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 13,537,109 – 13,537,200 |
| Length | 91 |
| Max. P | 0.895198 |
| Location | 13,537,109 – 13,537,200 |
|---|---|
| Length | 91 |
| Sequences | 6 |
| Columns | 118 |
| Reading direction | forward |
| Mean pairwise identity | 76.25 |
| Mean single sequence MFE | -22.58 |
| Consensus MFE | -10.47 |
| Energy contribution | -10.08 |
| Covariance contribution | -0.39 |
| Combinations/Pair | 1.25 |
| Mean z-score | -2.28 |
| Structure conservation index | 0.46 |
| SVM decision value | 0.99 |
| SVM RNA-class probability | 0.895198 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 13537109 91 + 23771897 ------------C----CUUUUUGCCUUUUUCAAUUUUCAUUUUCGCAGCUAAACUGUGAAACAAUUUUUAAUUAACACUUUCAAGUUGAGCAGCGG-----------CAGCGGGUAA ------------.----((..(((((...............((((((((.....))))))))..........(((((........))))).....))-----------)))..))... ( -18.50) >DroVir_CAF1 40095 87 + 1 ----------------------GCCCUUUUUCAAUUUUCAUUUUCGCAGCUAAACUGUGAAACAAUUUUUAAUUAACACUUUUAAGUUGGGCGCGCG---------CUUAGCUAAAAA ----------------------((((...............((((((((.....))))))))............(((........)))))))..((.---------....))...... ( -17.20) >DroPse_CAF1 27712 104 + 1 ------------A--CUCCCUUUGCCUUUUUCAAUUUUCAUUUUCGCAGCUAAACUGUGAAACAAUUUUUAAUUAACACUUUCAAGUUGAGCAGCAGGGGAAAGGGAGAAGCGAAAGA ------------.--((((((((.((((.............((((((((.....))))))))..........(((((........))))).....)))).))))))))...(....). ( -29.70) >DroGri_CAF1 36118 87 + 1 ----------------------GCCCUUUUUCAAUUUUCAUUUUCGCAGCUAAACUGUGAAACAAUUUUUAAUUAACACUUUUAAGAUGGGCGCGCG---------CUCAGCACAAAA ----------------------((((...............((((((((.....))))))))....((((((.........)))))).))))(.((.---------....)).).... ( -18.70) >DroAna_CAF1 26249 107 + 1 CCUCGCCGCAACCCUAUCCCUGCGCCUUUUUCAAUUUUCAUUUUCGCAGCUAAACUGUGAAACAAUUUUUAAUUAACACUUUCAAGUUGAGCAGCAG-----------CAGCGGAAAA ................(((((((((................((((((((.....))))))))..........(((((........)))))...)).)-----------))).)))... ( -21.70) >DroPer_CAF1 27799 104 + 1 ------------A--CUCCCUUUGCCUUUUUCAAUUUUCAUUUUCGCAGCUAAACUGUGAAACAAUUUUUAAUUAACACUUUCAAGUUGAGCAGCAGGGGAAAGGGAGAAGCGAAAGA ------------.--((((((((.((((.............((((((((.....))))))))..........(((((........))))).....)))).))))))))...(....). ( -29.70) >consensus _________________CCCUUUGCCUUUUUCAAUUUUCAUUUUCGCAGCUAAACUGUGAAACAAUUUUUAAUUAACACUUUCAAGUUGAGCAGCAG___________CAGCGAAAAA ......................(((................((((((((.....))))))))..........(((((........)))))...)))...................... (-10.47 = -10.08 + -0.39)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:34:29 2006