Locus 4820

Sequence ID 3L_DroMel_CAF1
Location 13,515,700 – 13,515,817
Length 117
Max. P 0.500000
window7597

overview

Window 7

Location 13,515,700 – 13,515,817
Length 117
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 82.99
Mean single sequence MFE -52.70
Consensus MFE -32.33
Energy contribution -32.55
Covariance contribution 0.22
Combinations/Pair 1.23
Mean z-score -2.03
Structure conservation index 0.61
SVM decision value -0.07
SVM RNA-class probability 0.500000
Prediction OTHER

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 13515700 117 - 23771897
CUCGCUGCCGUCGCCGACCAUGCCCAACUUCAACAUGGGCGCCAACACGCCCAACGGACAGCCCGGCGGAGCGGCCGCCGCUGCUGCUGCGGCGGCUG---CCGCGGACGGCGUCUUCAC
...(.(((((((.(((.((................((((((......))))))..((.....))))))).(((((.((((((((....)))))))).)---)))).))))))).)..... ( -61.70)
>DroVir_CAF1 13898 117 - 1
GUCGCUGCCCUCGCCAACGAUGCCCAACUUCAAUAUGGGCGCCAAUACGCCCAAUGGCCAGCCCGGCGGGGCUGCAGCCGCCGCUGCUGCCGCUUCAG---UUGCGGAUGGUGUCUUCAC
...((.((((.((((....................((((((......))))))..((....)).)))))))).)).((((((((.((((......)))---).)))).))))........ ( -48.90)
>DroGri_CAF1 8957 117 - 1
GUCGCUGCCAUCGCCAACGAUGCCCAACUUCAAUAUGGGCGCCAAUACGCCCAAUGGCCAGCCGGGUGGCGCUGCAGCUGCCGCUGCUGCUGCUUCAG---UGGCGGAUGGUGUCUUCAC
...(((((...((((......((((..........((((((......))))))..((....))))))))))..))))).((((((((..(((...)))---..)))).))))........ ( -49.60)
>DroWil_CAF1 4623 120 - 1
AUCGCUGCCAUCCCCAACUAUGCCCAAUUUCAAUAUGGGCGCCAAUACACCCAACGGCCAGCCAGGUGGAGCAGCUGCUGCUGCCGCUGCGGCCGCUGCAGCAGCGGAUGGUGUAUUCAC
...((.(((((((........(((((.........)))))((.....((((....((....)).))))..)).((((((((.((.((....)).)).)))))))))))))))))...... ( -49.00)
>DroMoj_CAF1 3300 117 - 1
GUCGCUGCCCUCGCCGACGAUGCCCAACUUUAAUAUGGGCGCCAAUACGCCCAAUGGGCAGCCAGGAGGCGCUGCCGCCGCUGCUGCAGCUGCCUCGG---UGGCCGACGGUGUCUUCAC
...((((((((((....)))...............((((((......))))))..)))))))..(((((((((((.(((((((..((....))..)))---)))).).)))))))))).. ( -56.50)
>DroAna_CAF1 3382 117 - 1
CUCCCUGCCCUCGCCCACCAUGCCCAACUUCAACAUGGGCGCCAACACGCCCAACGGUCAGCCCGGUGGCGCUGCCGCUGCUGCUGCCGCGGCCGCCG---CGGCGGACGGCGUUUUCAC
......(((.((..(((((................((((((......))))))..((....)).)))))((((((.((.(((((....))))).)).)---))))))).)))........ ( -50.50)
>consensus
GUCGCUGCCCUCGCCAACGAUGCCCAACUUCAAUAUGGGCGCCAAUACGCCCAACGGCCAGCCCGGUGGCGCUGCCGCCGCUGCUGCUGCGGCCGCAG___CGGCGGACGGUGUCUUCAC
...........(((((.((..((((..........((((((......))))))..((....))....)).)).(((((.((....)).)))))............)).)))))....... (-32.33 = -32.55 +   0.22)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:34:19 2006