Locus 4817

Sequence ID 3L_DroMel_CAF1
Location 13,496,437 – 13,496,528
Length 91
Max. P 0.698484
window7591

overview

Window 1

Location 13,496,437 – 13,496,528
Length 91
Sequences 6
Columns 110
Reading direction forward
Mean pairwise identity 76.01
Mean single sequence MFE -25.10
Consensus MFE -15.30
Energy contribution -16.56
Covariance contribution 1.25
Combinations/Pair 1.17
Mean z-score -1.47
Structure conservation index 0.61
SVM decision value 0.35
SVM RNA-class probability 0.698484
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 13496437 91 + 23771897
UUAGCCUUUCGCCGCACUCUGGAUCUAACUAAUCUGCCUUUGCUCCUUCCUACUGUUUGGUUAU------GGUUGGAUCAGUGUGCUCCGGA-----UUA--------UG
.......((((..((((.(((.(((((((((....(((...((...........))..)))..)------))))))))))).))))..))))-----...--------.. ( -26.30)
>DroSec_CAF1 8881 91 + 1
UUAGCCUUUCGCCGCACUCUGGAUCUAACUAAUCUGCCUUUGCUCCUUCCUACUGUUUGGUUAU------GGUUGGAUCAGUGUGCUCCGGA-----UUA--------UG
.......((((..((((.(((.(((((((((....(((...((...........))..)))..)------))))))))))).))))..))))-----...--------.. ( -26.30)
>DroSim_CAF1 9441 91 + 1
UUAGCCUUUCGCCGCACUCUGGAUCUAACUAAUCUGCCUUUGCUCCUUCCUACUGUUUGGUUAU------GGUUGGAUCAGUGUGCUCCGGA-----UUA--------UG
.......((((..((((.(((.(((((((((....(((...((...........))..)))..)------))))))))))).))))..))))-----...--------.. ( -26.30)
>DroEre_CAF1 8931 95 + 1
UUAGCCUUUCGCCGCACUCCGGAUCUAACUAAUCUGCCUUUGCUC----CUACUGGUUGGUUAC------GGUUGGAUCAGUGUGCUCCGGA-----UUAUGGGAUUAUG
....((.((((..((((....(((((((((((((.(((.......----.....))).))))..------)))))))))...))))..))))-----....))....... ( -27.20)
>DroYak_CAF1 9270 100 + 1
UUAGCCUCUCGCCGCGCUCUGGAUCUAACUAAUCUGCCUUUGCUC----CUACUGGUUGGUUAC------GCUUGGAUCAGUGUGCUCCGGAUUGGAUUAUGGCAUUAUG
..........(((((((.(((.((((((((((((.(((.......----.....))).))))).------).))))))))).))))(((.....)))....)))...... ( -28.40)
>DroPer_CAF1 10346 85 + 1
UUAGCUCUAAGUUGCGCUCUUGGCCUAACUGCU------UUGCUU----CUGCUGUUCAGUUCUAUUCCGGGUUUGGUGUGUGUUCUCC--A-----AAA--------AG
.............((((.((..(((((((((..------..((..----..))....))))).......))))..)).)))).......--.-----...--------.. ( -16.11)
>consensus
UUAGCCUUUCGCCGCACUCUGGAUCUAACUAAUCUGCCUUUGCUC____CUACUGUUUGGUUAU______GGUUGGAUCAGUGUGCUCCGGA_____UUA________UG
.......((((..((((.(((.((((((((.....(((...((...........))..))).........))))))))))).))))..)))).................. (-15.30 = -16.56 +   1.25)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:34:09 2006