Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 13,486,262 – 13,486,382 |
Length | 120 |
Max. P | 0.638169 |
Location | 13,486,262 – 13,486,382 |
---|---|
Length | 120 |
Sequences | 6 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 78.56 |
Mean single sequence MFE | -38.23 |
Consensus MFE | -19.40 |
Energy contribution | -19.32 |
Covariance contribution | -0.08 |
Combinations/Pair | 1.45 |
Mean z-score | -2.00 |
Structure conservation index | 0.51 |
SVM decision value | 0.22 |
SVM RNA-class probability | 0.638169 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 13486262 120 - 23771897 AACGGCAUUUGGAGGCAAAAGCCAAGGCCACGGAUGAGAACAUAGCACUUGCCUUUCAGGAUCUCAGUGUUCUAAUGGCCAUGGCCAAGGACAUGGUAGGAGUGUCCAAGACAAUAAGCA ...(((.((((....)))).)))..(((((.((...(((((((((..((((.....))))..))..))))))).....)).)))))..((((((.......))))))............. ( -37.10) >DroVir_CAF1 213 120 - 1 AACGUCACCUAGAAGCAAAGGCCAAGGCAGCGGACGAGAACAUAGCACUUGCGUUUCAGGAUCUGAAUGUUCUCAUGGCUAUGGCAAAGGACAUGGUGGGCUUAUCUAAAAAUAUAAGCA ....(((((......(....((((.(((.......((((((((.((....))...((((...))))))))))))...))).))))....)....)))))((((((........)))))). ( -33.90) >DroPse_CAF1 182 120 - 1 AGCGGCACCUGGAGGCGAAAGCUAAGGCCACAGAUGAGAACAUUGCACUAGCUUUCCAGGACCUCAGUGUUCUCAUGACCAUGGCCAAGGAUAUGGUGGGCCUGUCCAAGACAAUCAGCG .(((....)(((((((....))).(((((....((((((((((((......((.....))....)))))))))))).((((((.(....).)))))).))))).)))).........)). ( -42.00) >DroGri_CAF1 186 120 - 1 AACGUAAUCUUGAAGCAAAGGCCAAGGCGACGGACGAGAAUAUAGCACUUGCUUUUCAGGACUUGAGUGUCCUCAUGGCCAUGGCAAAGGAUAUGGUGGGUCUGUCCAAGAAUAUUAGCA ...(((.(((((........((....))(((((((..(((...(((....))).)))(((((......)))))..(.((((((........)))))).))))))))))))).)))..... ( -35.10) >DroWil_CAF1 186 120 - 1 AACGUCAUCUGGAGGCCAAAGCCAAGGCUACAGAUGAAAACAUCGCUUUGGCCUUCCAAGAUCUUUCCGUUCUAAUGGCCAUGGCCAAGGAUAUGGUCGGCUUGUCCAAGACGAUCAGUG ..((((....((((((((((((...(....).((((....))))))))))))))))((((.((...(((((((..((((....)))).))).))))..)))))).....))))....... ( -43.70) >DroAna_CAF1 200 120 - 1 AGCGGAAUUUAGAGGCAAAGGCCAAAGAAACGGAUGAAAACAUUGCAUUGGCCUUCCAGGAUCUUAGUGUUCUGAUGGCCAUGGCCAAGGACAUGGUAGGUUUGUCUAAAACCAUCAGCA .((.((.((((((((..((((((((.(.....((((....)))).).)))))))))).((((((..(((((((..((((....)))))))))))...)))))).))))))....)).)). ( -37.60) >consensus AACGGCAUCUGGAGGCAAAAGCCAAGGCAACGGAUGAGAACAUAGCACUUGCCUUCCAGGAUCUCAGUGUUCUCAUGGCCAUGGCCAAGGACAUGGUGGGCUUGUCCAAGACAAUCAGCA .........(((((((((..((......................))..)))))...((((.(((..(((((((..((((....)))))))))))...)))))))))))............ (-19.40 = -19.32 + -0.08)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:34:07 2006